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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFNQ] sediment metagenome; Lake sediment
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181361382
OFNQ01000690
[OFNQ] sediment metagenome; Lake sediment
18
94
+
Asn
GTT
[ENA]
¢þ
>WENV181361385
OFNQ01001102
[OFNQ] sediment metagenome; Lake sediment
130
52
-
Pro
GGG
[ENA]
¢þ
>WENV181361394
OFNQ01002119
[OFNQ] sediment metagenome; Lake sediment
160
84
-
Val
GAC
[ENA]
¢þ
>WENV181361397
OFNQ01002493
[OFNQ] sediment metagenome; Lake sediment
215
286
+
Asp
GTC
[ENA]
¢þ
>WENV181361390
OFNQ01001620
[OFNQ] sediment metagenome; Lake sediment
278
351
+
Val
TAC
[ENA]
¢þ
>WENV181361388
OFNQ01001381
[OFNQ] sediment metagenome; Lake sediment
307
393
+
Ser
AGA
[ENA]
¢þ
>WENV181361396
OFNQ01002297
[OFNQ] sediment metagenome; Lake sediment
312
239
-
Ile
GAT
[ENA]
¢þ
>WENV181361393
OFNQ01001998
[OFNQ] sediment metagenome; Lake sediment
320
414
+
Lys
TTT
[ENA]
¢þ
>WENV181361387
OFNQ01001207
[OFNQ] sediment metagenome; Lake sediment
333
251
-
Leu
TAA
[ENA]
¢þ
>WENV181361391
OFNQ01001661
[OFNQ] sediment metagenome; Lake sediment
377
301
-
Thr
TGT
[ENA]
¢þ
>WENV181361395
OFNQ01002297
[OFNQ] sediment metagenome; Lake sediment
389
316
-
Gln
TTG
[ENA]
¢þ
>WENV181361384
OFNQ01000870
[OFNQ] sediment metagenome; Lake sediment
401
486
+
Leu
CAG
[ENA]
¢þ
>WENV181361383
OFNQ01000855
[OFNQ] sediment metagenome; Lake sediment
440
523
+
Gly
TCC
[ENA]
¢þ
>WENV181361392
OFNQ01001988
[OFNQ] sediment metagenome; Lake sediment
447
529
+
Leu
CAA
[ENA]
¢þ
>WENV181361389
OFNQ01001421
[OFNQ] sediment metagenome; Lake sediment
498
572
+
Pro
GGG
[ENA]
¢þ
>WENV181361386
OFNQ01001207
[OFNQ] sediment metagenome; Lake sediment
564
482
-
Leu
CAA
[ENA]
¢þ
>WENV181361380
OFNQ01000042
[OFNQ] sediment metagenome; Lake sediment
855
927
+
Trp
CCA
[ENA]
¢þ
>WENV181361381
OFNQ01000042
[OFNQ] sediment metagenome; Lake sediment
1161
1234
+
Gln
CTG
[ENA]
¢þ
>WENV181361379
OFNQ01000017
[OFNQ] sediment metagenome; Lake sediment
4992
4905
-
Tyr
GTA
[ENA]
¢þ
>WENV181361378
OFNQ01000017
[OFNQ] sediment metagenome; Lake sediment
5160
5086
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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