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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFNV] sediment metagenome; Lake sediment
HIT:
13 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181361435
OFNV01000820
[OFNV] sediment metagenome; Lake sediment
89
164
+
Asp
ATC
[ENA]
¢þ
>WENV181361433
OFNV01000790
[OFNV] sediment metagenome; Lake sediment
95
18
-
Val
TAC
[ENA]
¢þ
>WENV181361429
OFNV01000415
[OFNV] sediment metagenome; Lake sediment
139
54
-
Leu
CAG
[ENA]
¢þ
>WENV181361432
OFNV01000761
[OFNV] sediment metagenome; Lake sediment
139
63
-
Lys
CTT
[ENA]
¢þ
>WENV181361431
OFNV01000546
[OFNV] sediment metagenome; Lake sediment
271
199
-
Arg
CCT
[ENA]
¢þ
>WENV181361428
OFNV01000318
[OFNV] sediment metagenome; Lake sediment
355
425
+
Gln
CTG
[ENA]
¢þ
>WENV181361430
OFNV01000492
[OFNV] sediment metagenome; Lake sediment
410
333
-
Gly
GCC
[ENA]
¢þ
>WENV181361434
OFNV01000815
[OFNV] sediment metagenome; Lake sediment
435
511
+
Sup
CTA
[ENA]
¢þ
>WENV181361426
OFNV01000018
[OFNV] sediment metagenome; Lake sediment
1221
1145
-
Ile
GAT
[ENA]
¢þ
>WENV181361427
OFNV01000072
[OFNV] sediment metagenome; Lake sediment
1327
1252
-
Arg
ACG
[ENA]
¢þ
>WENV181361425
OFNV01000018
[OFNV] sediment metagenome; Lake sediment
1386
1312
-
Met
CAT
[ENA]
¢þ
>WENV181361424
OFNV01000018
[OFNV] sediment metagenome; Lake sediment
1479
1403
-
Asp
GTC
[ENA]
¢þ
>WENV181361423
OFNV01000007
[OFNV] sediment metagenome; Lake sediment
3022
2948
-
Pro
TGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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