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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA gene List
[OFNX] sediment metagenome; Lake sediment
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181361461
OFNX01001637
[OFNX] sediment metagenome; Lake sediment
152
79
-
Gln
CTG
[ENA]
¢þ
>WENV181361465
OFNX01003030
[OFNX] sediment metagenome; Lake sediment
158
230
+
Ala
TGC
[ENA]
¢þ
>WENV181361454
OFNX01001096
[OFNX] sediment metagenome; Lake sediment
164
245
+
Met
CAT
[ENA]
¢þ
>WENV181361449
OFNX01000675
[OFNX] sediment metagenome; Lake sediment
198
284
+
Ser
CGA
[ENA]
¢þ
>WENV181361464
OFNX01002212
[OFNX] sediment metagenome; Lake sediment
202
279
+
Lys
CTT
[ENA]
¢þ
>WENV181361450
OFNX01000721
[OFNX] sediment metagenome; Lake sediment
225
300
+
Lys
TTT
[ENA]
¢þ
>WENV181361452
OFNX01000974
[OFNX] sediment metagenome; Lake sediment
251
328
+
Pro
CGG
[ENA]
¢þ
>WENV181361458
OFNX01001593
[OFNX] sediment metagenome; Lake sediment
269
347
+
Ile
GAT
[ENA]
¢þ
>WENV181361467
OFNX01003135
[OFNX] sediment metagenome; Lake sediment
281
205
-
Arg
TCT
[ENA]
¢þ
>WENV181361463
OFNX01002104
[OFNX] sediment metagenome; Lake sediment
299
383
+
Ser
CGA
[ENA]
¢þ
>WENV181361442
OFNX01000025
[OFNX] sediment metagenome; Lake sediment
337
266
-
Cys
GCA
[ENA]
¢þ
>WENV181361460
OFNX01001619
[OFNX] sediment metagenome; Lake sediment
364
291
-
Val
GAC
[ENA]
¢þ
>WENV181361457
OFNX01001421
[OFNX] sediment metagenome; Lake sediment
422
494
+
His
GTG
[ENA]
¢þ
>WENV181361455
OFNX01001133
[OFNX] sediment metagenome; Lake sediment
427
352
-
His
GTG
[ENA]
¢þ
>WENV181361462
OFNX01001781
[OFNX] sediment metagenome; Lake sediment
448
373
-
Ala
GGC
[ENA]
¢þ
>WENV181361466
OFNX01003089
[OFNX] sediment metagenome; Lake sediment
459
384
-
Lys
CTT
[ENA]
¢þ
>WENV181361448
OFNX01000428
[OFNX] sediment metagenome; Lake sediment
511
587
+
Val
GAC
[ENA]
¢þ
>WENV181361456
OFNX01001205
[OFNX] sediment metagenome; Lake sediment
557
634
+
fMet
CAT
[ENA]
¢þ
>WENV181361459
OFNX01001617
[OFNX] sediment metagenome; Lake sediment
588
513
-
Ala
TGC
[ENA]
¢þ
>WENV181361445
OFNX01000276
[OFNX] sediment metagenome; Lake sediment
638
554
-
Leu
CAG
[ENA]
¢þ
>WENV181361453
OFNX01001008
[OFNX] sediment metagenome; Lake sediment
661
584
-
Ile
GAT
[ENA]
¢þ
>WENV181361443
OFNX01000143
[OFNX] sediment metagenome; Lake sediment
745
820
+
fMet
CAT
[ENA]
¢þ
>WENV181361451
OFNX01000725
[OFNX] sediment metagenome; Lake sediment
757
834
+
Gln
TTG
[ENA]
¢þ
>WENV181361446
OFNX01000334
[OFNX] sediment metagenome; Lake sediment
804
728
-
Thr
TGT
[ENA]
¢þ
>WENV181361447
OFNX01000393
[OFNX] sediment metagenome; Lake sediment
961
891
-
Gly
CCC
[ENA]
¢þ
>WENV181361444
OFNX01000199
[OFNX] sediment metagenome; Lake sediment
1073
1001
-
Gly
GCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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