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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFNY] sediment metagenome; Lake sediment
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181361479
OFNY01002119
[OFNY] sediment metagenome; Lake sediment
75
163
+
Ser
TGA
[ENA]
¢þ
>WENV181361487
OFNY01003304
[OFNY] sediment metagenome; Lake sediment
76
150
+
Gln
TTG
[ENA]
¢þ
>WENV181361470
OFNY01000538
[OFNY] sediment metagenome; Lake sediment
76
153
+
Gly
GCC
[ENA]
¢þ
>WENV181361481
OFNY01002494
[OFNY] sediment metagenome; Lake sediment
83
157
+
Glu
CTC
[ENA]
¢þ
>WENV181361486
OFNY01003292
[OFNY] sediment metagenome; Lake sediment
87
13
-
Phe
GAA
[ENA]
¢þ
>WENV181361484
OFNY01003121
[OFNY] sediment metagenome; Lake sediment
108
34
-
Asn
GTT
[ENA]
¢þ
>WENV181361476
OFNY01001869
[OFNY] sediment metagenome; Lake sediment
131
216
+
Ser
GCT
[ENA]
¢þ
>WENV181361469
OFNY01000453
[OFNY] sediment metagenome; Lake sediment
159
81
-
Ile
GAT
[ENA]
¢þ
>WENV181361489
OFNY01004181
[OFNY] sediment metagenome; Lake sediment
180
107
-
Val
GAC
[ENA]
¢þ
>WENV181361473
OFNY01001273
[OFNY] sediment metagenome; Lake sediment
202
127
-
Ala
GGC
[ENA]
¢þ
>WENV181361480
OFNY01002197
[OFNY] sediment metagenome; Lake sediment
215
299
+
Leu
CAA
[ENA]
¢þ
>WENV181361468
OFNY01000232
[OFNY] sediment metagenome; Lake sediment
251
179
-
Gly
GCC
[ENA]
¢þ
>WENV181361482
OFNY01002624
[OFNY] sediment metagenome; Lake sediment
328
415
+
Leu
TAG
[ENA]
¢þ
>WENV181361474
OFNY01001412
[OFNY] sediment metagenome; Lake sediment
346
274
-
His
GTG
[ENA]
¢þ
>WENV181361483
OFNY01003097
[OFNY] sediment metagenome; Lake sediment
398
469
+
Cys
GCA
[ENA]
¢þ
>WENV181361485
OFNY01003274
[OFNY] sediment metagenome; Lake sediment
410
487
+
Lys
CTT
[ENA]
¢þ
>WENV181361488
OFNY01003865
[OFNY] sediment metagenome; Lake sediment
456
541
+
Leu
GAG
[ENA]
¢þ
>WENV181361475
OFNY01001868
[OFNY] sediment metagenome; Lake sediment
463
550
+
Ser
GCT
[ENA]
¢þ
>WENV181361472
OFNY01000718
[OFNY] sediment metagenome; Lake sediment
467
393
-
fMet
CAT
[ENA]
¢þ
>WENV181361477
OFNY01002040
[OFNY] sediment metagenome; Lake sediment
468
544
+
Lys
CTT
[ENA]
¢þ
>WENV181361478
OFNY01002072
[OFNY] sediment metagenome; Lake sediment
474
397
-
Pro
TGG
[ENA]
¢þ
>WENV181361471
OFNY01000657
[OFNY] sediment metagenome; Lake sediment
900
984
+
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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