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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OFOI] sediment metagenome; Lake sediment
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181361782
OFOI01001085
[OFOI] sediment metagenome; Lake sediment
37
111
+
Ile2
CAT
[ENA]
¢þ
>WENV181361772
OFOI01000318
[OFOI] sediment metagenome; Lake sediment
40
112
+
Gly
TCC
[ENA]
¢þ
>WENV181361783
OFOI01001249
[OFOI] sediment metagenome; Lake sediment
46
127
+
Leu
TAA
[ENA]
¢þ
>WENV181361775
OFOI01000356
[OFOI] sediment metagenome; Lake sediment
100
25
-
Lys
CTT
[ENA]
¢þ
>WENV181361781
OFOI01000792
[OFOI] sediment metagenome; Lake sediment
111
183
+
Ala
TGC
[ENA]
¢þ
>WENV181361773
OFOI01000318
[OFOI] sediment metagenome; Lake sediment
115
188
+
Val
CAC
[ENA]
¢þ
>WENV181361770
OFOI01000139
[OFOI] sediment metagenome; Lake sediment
187
273
+
Ser
CGA
[ENA]
¢þ
>WENV181361774
OFOI01000323
[OFOI] sediment metagenome; Lake sediment
202
130
-
His
GTG
[ENA]
¢þ
>WENV181361779
OFOI01000594
[OFOI] sediment metagenome; Lake sediment
207
281
+
Phe
GAA
[ENA]
¢þ
>WENV181361784
OFOI01001249
[OFOI] sediment metagenome; Lake sediment
209
281
+
Phe
GAA
[ENA]
¢þ
>WENV181361767
OFOI01000104
[OFOI] sediment metagenome; Lake sediment
220
147
-
Pro
GGG
[ENA]
¢þ
>WENV181361776
OFOI01000416
[OFOI] sediment metagenome; Lake sediment
244
173
-
Thr
CGT
[ENA]
¢þ
>WENV181361787
OFOI01001379
[OFOI] sediment metagenome; Lake sediment
252
164
-
Ser
GCT
[ENA]
¢þ
>WENV181361785
OFOI01001249
[OFOI] sediment metagenome; Lake sediment
282
354
+
Lys
TTT
[ENA]
¢þ
>WENV181361771
OFOI01000279
[OFOI] sediment metagenome; Lake sediment
371
297
-
Pro
CGG
[ENA]
¢þ
>WENV181361786
OFOI01001320
[OFOI] sediment metagenome; Lake sediment
413
489
+
Lys
CTT
[ENA]
¢þ
>WENV181361768
OFOI01000107
[OFOI] sediment metagenome; Lake sediment
418
344
-
Gln
TTG
[ENA]
¢þ
>WENV181361778
OFOI01000494
[OFOI] sediment metagenome; Lake sediment
503
577
+
Glu
TTC
[ENA]
¢þ
>WENV181361780
OFOI01000723
[OFOI] sediment metagenome; Lake sediment
597
672
+
Asn
GTT
[ENA]
¢þ
>WENV181361766
OFOI01000051
[OFOI] sediment metagenome; Lake sediment
738
652
-
Ser
GGA
[ENA]
¢þ
>WENV181361777
OFOI01000417
[OFOI] sediment metagenome; Lake sediment
757
672
-
Ser
GCT
[ENA]
¢þ
>WENV181361765
OFOI01000046
[OFOI] sediment metagenome; Lake sediment
798
870
+
Gly
GCC
[ENA]
¢þ
>WENV181361769
OFOI01000108
[OFOI] sediment metagenome; Lake sediment
1238
1163
-
Lys
TTT
[ENA]
¢þ
>WENV181361764
OFOI01000008
[OFOI] sediment metagenome; Lake sediment
1643
1570
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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