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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFOQ] sediment metagenome; Lake sediment
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181363079
OFOQ01000509
[OFOQ] sediment metagenome; Lake sediment
70
152
+
Leu
TAG
[ENA]
¢þ
>WENV181363081
OFOQ01000694
[OFOQ] sediment metagenome; Lake sediment
162
73
-
Ser
CGA
[ENA]
¢þ
>WENV181363080
OFOQ01000694
[OFOQ] sediment metagenome; Lake sediment
239
165
-
fMet
CAT
[ENA]
¢þ
>WENV181363076
OFOQ01000450
[OFOQ] sediment metagenome; Lake sediment
241
332
+
Ser
GGA
[ENA]
¢þ
>WENV181363087
OFOQ01001676
[OFOQ] sediment metagenome; Lake sediment
334
259
-
Glu
CTC
[ENA]
¢þ
>WENV181363085
OFOQ01001574
[OFOQ] sediment metagenome; Lake sediment
357
428
+
Thr
TGT
[ENA]
¢þ
>WENV181363071
OFOQ01000103
[OFOQ] sediment metagenome; Lake sediment
392
318
-
Lys
TTT
[ENA]
¢þ
>WENV181363083
OFOQ01000791
[OFOQ] sediment metagenome; Lake sediment
425
352
-
Glu
TTC
[ENA]
¢þ
>WENV181363078
OFOQ01000467
[OFOQ] sediment metagenome; Lake sediment
427
351
-
Pro
CGG
[ENA]
¢þ
>WENV181363086
OFOQ01001574
[OFOQ] sediment metagenome; Lake sediment
456
527
+
Met
CAT
[ENA]
¢þ
>WENV181363077
OFOQ01000467
[OFOQ] sediment metagenome; Lake sediment
510
436
-
Pro
GGG
[ENA]
¢þ
>WENV181363084
OFOQ01001059
[OFOQ] sediment metagenome; Lake sediment
535
611
+
Thr
GGT
[ENA]
¢þ
>WENV181363063
OFOQ01000035
[OFOQ] sediment metagenome; Lake sediment
723
797
+
Cys
GCA
[ENA]
¢þ
>WENV181363075
OFOQ01000433
[OFOQ] sediment metagenome; Lake sediment
778
852
+
Arg
TCT
[ENA]
¢þ
>WENV181363064
OFOQ01000035
[OFOQ] sediment metagenome; Lake sediment
804
877
+
Asn
GTT
[ENA]
¢þ
>WENV181363082
OFOQ01000726
[OFOQ] sediment metagenome; Lake sediment
883
806
-
Trp
CCA
[ENA]
¢þ
>WENV181363074
OFOQ01000398
[OFOQ] sediment metagenome; Lake sediment
911
984
+
Ile2
CAT
[ENA]
¢þ
>WENV181363072
OFOQ01000143
[OFOQ] sediment metagenome; Lake sediment
1353
1429
+
His
GTG
[ENA]
¢þ
>WENV181363065
OFOQ01000035
[OFOQ] sediment metagenome; Lake sediment
1398
1482
+
Ser
TGA
[ENA]
¢þ
>WENV181363070
OFOQ01000103
[OFOQ] sediment metagenome; Lake sediment
1809
1732
-
Arg
CCG
[ENA]
¢þ
>WENV181363073
OFOQ01000194
[OFOQ] sediment metagenome; Lake sediment
1875
1951
+
Ala
GGC
[ENA]
¢þ
>WENV181363069
OFOQ01000103
[OFOQ] sediment metagenome; Lake sediment
2505
2421
-
Ser
CGA
[ENA]
¢þ
>WENV181363068
OFOQ01000103
[OFOQ] sediment metagenome; Lake sediment
2591
2515
-
Arg
CCT
[ENA]
¢þ
>WENV181363067
OFOQ01000103
[OFOQ] sediment metagenome; Lake sediment
2716
2631
-
Tyr
GTA
[ENA]
¢þ
>WENV181363066
OFOQ01000067
[OFOQ] sediment metagenome; Lake sediment
3207
3134
-
Met
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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