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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFOT] sediment metagenome; Lake sediment
HIT:
42 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181363161
OFOT01000382
[OFOT] sediment metagenome; Lake sediment
29
104
+
Lys
TTT
[ENA]
¢þ
>WENV181363169
OFOT01001029
[OFOT] sediment metagenome; Lake sediment
35
109
+
Glu
TTC
[ENA]
¢þ
>WENV181363193
OFOT01002839
[OFOT] sediment metagenome; Lake sediment
41
112
+
Cys
GCA
[ENA]
¢þ
>WENV181363192
OFOT01002636
[OFOT] sediment metagenome; Lake sediment
45
118
+
Leu
CAA
[ENA]
¢þ
>WENV181363167
OFOT01000789
[OFOT] sediment metagenome; Lake sediment
51
121
+
Gly
CCC
[ENA]
¢þ
>WENV181363190
OFOT01002590
[OFOT] sediment metagenome; Lake sediment
51
122
+
Lys
CTT
[ENA]
¢þ
>WENV181363162
OFOT01000433
[OFOT] sediment metagenome; Lake sediment
100
22
-
Ile
GAT
[ENA]
¢þ
>WENV181363185
OFOT01002056
[OFOT] sediment metagenome; Lake sediment
129
205
+
Ile
GAT
[ENA]
¢þ
>WENV181363178
OFOT01001533
[OFOT] sediment metagenome; Lake sediment
145
65
-
Cys
GCA
[ENA]
¢þ
>WENV181363155
OFOT01000104
[OFOT] sediment metagenome; Lake sediment
147
63
-
Leu
CAA
[ENA]
¢þ
>WENV181363189
OFOT01002331
[OFOT] sediment metagenome; Lake sediment
171
246
+
Leu
CAA
[ENA]
¢þ
>WENV181363154
OFOT01000096
[OFOT] sediment metagenome; Lake sediment
176
99
-
Gln
TTG
[ENA]
¢þ
>WENV181363183
OFOT01001826
[OFOT] sediment metagenome; Lake sediment
191
262
+
Arg
TCG
[ENA]
¢þ
>WENV181363159
OFOT01000252
[OFOT] sediment metagenome; Lake sediment
204
278
+
Ile
GAT
[ENA]
¢þ
>WENV181363188
OFOT01002316
[OFOT] sediment metagenome; Lake sediment
213
137
-
Lys
TTT
[ENA]
¢þ
>WENV181363176
OFOT01001445
[OFOT] sediment metagenome; Lake sediment
257
331
+
Arg
CCT
[ENA]
¢þ
>WENV181363180
OFOT01001640
[OFOT] sediment metagenome; Lake sediment
277
201
-
Thr
TGT
[ENA]
¢þ
>WENV181363181
OFOT01001788
[OFOT] sediment metagenome; Lake sediment
279
206
-
Gln
CTG
[ENA]
¢þ
>WENV181363191
OFOT01002590
[OFOT] sediment metagenome; Lake sediment
281
364
+
Ser
CGA
[ENA]
¢þ
>WENV181363186
OFOT01002146
[OFOT] sediment metagenome; Lake sediment
284
358
+
Phe
GAA
[ENA]
¢þ
>WENV181363187
OFOT01002316
[OFOT] sediment metagenome; Lake sediment
367
292
-
Lys
TTT
[ENA]
¢þ
>WENV181363166
OFOT01000597
[OFOT] sediment metagenome; Lake sediment
390
475
+
Ser
GCT
[ENA]
¢þ
>WENV181363182
OFOT01001804
[OFOT] sediment metagenome; Lake sediment
399
313
-
Ser
CGA
[ENA]
¢þ
>WENV181363174
OFOT01001389
[OFOT] sediment metagenome; Lake sediment
406
331
-
Gly
CCC
[ENA]
¢þ
>WENV181363172
OFOT01001203
[OFOT] sediment metagenome; Lake sediment
425
352
-
Val
GAC
[ENA]
¢þ
>WENV181363170
OFOT01001051
[OFOT] sediment metagenome; Lake sediment
446
535
+
Ile
TAT
[ENA]
¢þ
>WENV181363177
OFOT01001525
[OFOT] sediment metagenome; Lake sediment
449
524
+
Lys
CTT
[ENA]
¢þ
>WENV181363179
OFOT01001600
[OFOT] sediment metagenome; Lake sediment
469
395
-
Pro
TGG
[ENA]
¢þ
>WENV181363171
OFOT01001051
[OFOT] sediment metagenome; Lake sediment
537
611
+
Lys
CTT
[ENA]
¢þ
>WENV181363184
OFOT01001842
[OFOT] sediment metagenome; Lake sediment
553
475
-
fMet
CAT
[ENA]
¢þ
>WENV181363175
OFOT01001437
[OFOT] sediment metagenome; Lake sediment
597
673
+
Val
CAC
[ENA]
¢þ
>WENV181363173
OFOT01001224
[OFOT] sediment metagenome; Lake sediment
640
556
-
Leu
TAG
[ENA]
¢þ
>WENV181363157
OFOT01000198
[OFOT] sediment metagenome; Lake sediment
731
659
-
Ala
CGC
[ENA]
¢þ
>WENV181363168
OFOT01000966
[OFOT] sediment metagenome; Lake sediment
776
852
+
Ile
TAT
[ENA]
¢þ
>WENV181363164
OFOT01000509
[OFOT] sediment metagenome; Lake sediment
817
745
-
Gly
GCC
[ENA]
¢þ
>WENV181363156
OFOT01000151
[OFOT] sediment metagenome; Lake sediment
826
900
+
Pro
CGG
[ENA]
¢þ
>WENV181363165
OFOT01000585
[OFOT] sediment metagenome; Lake sediment
1049
976
-
Ala
TGC
[ENA]
¢þ
>WENV181363163
OFOT01000446
[OFOT] sediment metagenome; Lake sediment
1065
1139
+
Phe
GAA
[ENA]
¢þ
>WENV181363160
OFOT01000301
[OFOT] sediment metagenome; Lake sediment
1237
1308
+
Thr
CGT
[ENA]
¢þ
>WENV181363158
OFOT01000221
[OFOT] sediment metagenome; Lake sediment
1545
1472
-
Pro
GGG
[ENA]
¢þ
>WENV181363153
OFOT01000091
[OFOT] sediment metagenome; Lake sediment
1895
1968
+
Val
GAC
[ENA]
¢þ
>WENV181363152
OFOT01000045
[OFOT] sediment metagenome; Lake sediment
3786
3712
-
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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