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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OFOV] sediment metagenome; Lake sediment
HIT:
141 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181364468
OFOV01004443
[OFOV] sediment metagenome; Lake sediment
4
86
+
Leu
TAG
[ENA]
¢þ
>WENV181364449
OFOV01002340
[OFOV] sediment metagenome; Lake sediment
14
91
+
Gly
GCC
[ENA]
¢þ
>WENV181364402
OFOV01000484
[OFOV] sediment metagenome; Lake sediment
52
125
+
Glu
TTC
[ENA]
¢þ
>WENV181364370
OFOV01000016
[OFOV] sediment metagenome; Lake sediment
87
12
-
Lys
TTT
[ENA]
¢þ
>WENV181364471
OFOV01004954
[OFOV] sediment metagenome; Lake sediment
93
19
-
Pro
TGG
[ENA]
¢þ
>WENV181364438
OFOV01001575
[OFOV] sediment metagenome; Lake sediment
94
179
+
Leu
TAG
[ENA]
¢þ
>WENV181364434
OFOV01001473
[OFOV] sediment metagenome; Lake sediment
99
175
+
His
GTG
[ENA]
¢þ
>WENV181364424
OFOV01000865
[OFOV] sediment metagenome; Lake sediment
103
29
-
Gln
TTG
[ENA]
¢þ
>WENV181364445
OFOV01001968
[OFOV] sediment metagenome; Lake sediment
107
184
+
Leu
TAA
[ENA]
¢þ
>WENV181364431
OFOV01001176
[OFOV] sediment metagenome; Lake sediment
108
183
+
fMet
CAT
[ENA]
¢þ
>WENV181364425
OFOV01000937
[OFOV] sediment metagenome; Lake sediment
116
41
-
Ile
GAT
[ENA]
¢þ
>WENV181364443
OFOV01001896
[OFOV] sediment metagenome; Lake sediment
130
53
-
Pro
TGG
[ENA]
¢þ
>WENV181364403
OFOV01000484
[OFOV] sediment metagenome; Lake sediment
135
209
+
Gly
GCC
[ENA]
¢þ
>WENV181364442
OFOV01001875
[OFOV] sediment metagenome; Lake sediment
169
85
-
Ser
GGA
[ENA]
¢þ
>WENV181364455
OFOV01003036
[OFOV] sediment metagenome; Lake sediment
169
240
+
Asp
GTC
[ENA]
¢þ
>WENV181364435
OFOV01001473
[OFOV] sediment metagenome; Lake sediment
182
259
+
Val
CAC
[ENA]
¢þ
>WENV181364446
OFOV01001968
[OFOV] sediment metagenome; Lake sediment
188
264
+
Met
CAT
[ENA]
¢þ
>WENV181364459
OFOV01003517
[OFOV] sediment metagenome; Lake sediment
190
262
+
Arg
ACG
[ENA]
¢þ
>WENV181364464
OFOV01003807
[OFOV] sediment metagenome; Lake sediment
203
131
-
Cys
GCA
[ENA]
¢þ
>WENV181364419
OFOV01000615
[OFOV] sediment metagenome; Lake sediment
206
134
-
Arg
CCT
[ENA]
¢þ
>WENV181364404
OFOV01000484
[OFOV] sediment metagenome; Lake sediment
215
289
+
Val
TAC
[ENA]
¢þ
>WENV181364450
OFOV01002810
[OFOV] sediment metagenome; Lake sediment
218
292
+
Gly
TCC
[ENA]
¢þ
>WENV181364371
OFOV01000029
[OFOV] sediment metagenome; Lake sediment
222
295
+
Leu
CAA
[ENA]
¢þ
>WENV181364420
OFOV01000696
[OFOV] sediment metagenome; Lake sediment
229
154
-
Trp
CCA
[ENA]
¢þ
>WENV181364386
OFOV01000180
[OFOV] sediment metagenome; Lake sediment
243
170
-
Met
CAT
[ENA]
¢þ
>WENV181364441
OFOV01001875
[OFOV] sediment metagenome; Lake sediment
267
179
-
Ser
TGA
[ENA]
¢þ
>WENV181364437
OFOV01001495
[OFOV] sediment metagenome; Lake sediment
271
195
-
Lys
CTT
[ENA]
¢þ
>WENV181364470
OFOV01004914
[OFOV] sediment metagenome; Lake sediment
293
218
-
Ile
TAT
[ENA]
¢þ
>WENV181364451
OFOV01002810
[OFOV] sediment metagenome; Lake sediment
302
376
+
Gly
CCC
[ENA]
¢þ
>WENV181364401
OFOV01000476
[OFOV] sediment metagenome; Lake sediment
315
390
+
Gln
CTG
[ENA]
¢þ
>WENV181364453
OFOV01002883
[OFOV] sediment metagenome; Lake sediment
316
391
+
Pro
TGG
[ENA]
¢þ
>WENV181364385
OFOV01000180
[OFOV] sediment metagenome; Lake sediment
325
253
-
Asp
GTC
[ENA]
¢þ
>WENV181364469
OFOV01004529
[OFOV] sediment metagenome; Lake sediment
326
238
-
Leu
CAA
[ENA]
¢þ
>WENV181364448
OFOV01002110
[OFOV] sediment metagenome; Lake sediment
334
263
-
Sup
CTA
[ENA]
¢þ
>WENV181364462
OFOV01003574
[OFOV] sediment metagenome; Lake sediment
344
269
-
Ala
CGC
[ENA]
¢þ
>WENV181364452
OFOV01002824
[OFOV] sediment metagenome; Lake sediment
346
417
+
Cys
GCA
[ENA]
¢þ
>WENV181364466
OFOV01004218
[OFOV] sediment metagenome; Lake sediment
364
440
+
Ile
GAT
[ENA]
¢þ
>WENV181364444
OFOV01001947
[OFOV] sediment metagenome; Lake sediment
375
287
-
Ser
GCT
[ENA]
¢þ
>WENV181364457
OFOV01003447
[OFOV] sediment metagenome; Lake sediment
384
298
-
Leu
CAA
[ENA]
¢þ
>WENV181364405
OFOV01000484
[OFOV] sediment metagenome; Lake sediment
390
473
+
Leu
TAG
[ENA]
¢þ
>WENV181364369
OFOV01000016
[OFOV] sediment metagenome; Lake sediment
392
316
-
Thr
CGT
[ENA]
¢þ
>WENV181364456
OFOV01003139
[OFOV] sediment metagenome; Lake sediment
401
314
-
Leu
CAG
[ENA]
¢þ
>WENV181364411
OFOV01000516
[OFOV] sediment metagenome; Lake sediment
414
490
+
Sup
CTA
[ENA]
¢þ
>WENV181364467
OFOV01004335
[OFOV] sediment metagenome; Lake sediment
423
499
+
Leu
TAA
[ENA]
¢þ
>WENV181364454
OFOV01002998
[OFOV] sediment metagenome; Lake sediment
438
514
+
fMet
CAT
[ENA]
¢þ
>WENV181364426
OFOV01000960
[OFOV] sediment metagenome; Lake sediment
469
394
-
Gly
CCC
[ENA]
¢þ
>WENV181364460
OFOV01003522
[OFOV] sediment metagenome; Lake sediment
469
558
+
Leu
GAG
[ENA]
¢þ
>WENV181364406
OFOV01000484
[OFOV] sediment metagenome; Lake sediment
484
555
+
Gly
CCC
[ENA]
¢þ
>WENV181364461
OFOV01003536
[OFOV] sediment metagenome; Lake sediment
493
417
-
Thr
CGT
[ENA]
¢þ
>WENV181364432
OFOV01001298
[OFOV] sediment metagenome; Lake sediment
496
570
+
Gln
TTG
[ENA]
¢þ
>WENV181364421
OFOV01000750
[OFOV] sediment metagenome; Lake sediment
532
459
-
Gly
TCC
[ENA]
¢þ
>WENV181364465
OFOV01003857
[OFOV] sediment metagenome; Lake sediment
552
477
-
Lys
TTT
[ENA]
¢þ
>WENV181364414
OFOV01000592
[OFOV] sediment metagenome; Lake sediment
566
491
-
Arg
ACG
[ENA]
¢þ
>WENV181364458
OFOV01003489
[OFOV] sediment metagenome; Lake sediment
571
491
-
Leu
CAA
[ENA]
¢þ
>WENV181364463
OFOV01003611
[OFOV] sediment metagenome; Lake sediment
571
494
-
Leu
CAA
[ENA]
¢þ
>WENV181364433
OFOV01001298
[OFOV] sediment metagenome; Lake sediment
575
648
+
Gln
CTG
[ENA]
¢þ
>WENV181364428
OFOV01001069
[OFOV] sediment metagenome; Lake sediment
615
689
+
Val
TAC
[ENA]
¢þ
>WENV181364418
OFOV01000615
[OFOV] sediment metagenome; Lake sediment
630
548
-
Leu
TAA
[ENA]
¢þ
>WENV181364384
OFOV01000180
[OFOV] sediment metagenome; Lake sediment
651
576
-
Phe
GAA
[ENA]
¢þ
>WENV181364407
OFOV01000484
[OFOV] sediment metagenome; Lake sediment
652
736
+
Leu
TAA
[ENA]
¢þ
>WENV181364440
OFOV01001875
[OFOV] sediment metagenome; Lake sediment
701
615
-
Leu
CAA
[ENA]
¢þ
>WENV181364392
OFOV01000201
[OFOV] sediment metagenome; Lake sediment
702
779
+
Pro
GGG
[ENA]
¢þ
>WENV181364447
OFOV01002108
[OFOV] sediment metagenome; Lake sediment
706
622
-
Tyr
GTA
[ENA]
¢þ
>WENV181364423
OFOV01000845
[OFOV] sediment metagenome; Lake sediment
718
793
+
Ala
CGC
[ENA]
¢þ
>WENV181364415
OFOV01000610
[OFOV] sediment metagenome; Lake sediment
720
795
+
Arg
ACG
[ENA]
¢þ
>WENV181364422
OFOV01000813
[OFOV] sediment metagenome; Lake sediment
734
662
-
Arg
CCT
[ENA]
¢þ
>WENV181364391
OFOV01000183
[OFOV] sediment metagenome; Lake sediment
762
681
-
Lys
TTT
[ENA]
¢þ
>WENV181364436
OFOV01001473
[OFOV] sediment metagenome; Lake sediment
772
855
+
Leu
CAG
[ENA]
¢þ
>WENV181364397
OFOV01000259
[OFOV] sediment metagenome; Lake sediment
773
697
-
Val
GAC
[ENA]
¢þ
>WENV181364439
OFOV01001807
[OFOV] sediment metagenome; Lake sediment
783
708
-
Phe
GAA
[ENA]
¢þ
>WENV181364368
OFOV01000016
[OFOV] sediment metagenome; Lake sediment
827
751
-
Val
GAC
[ENA]
¢þ
>WENV181364390
OFOV01000183
[OFOV] sediment metagenome; Lake sediment
840
764
-
Leu
AAG
[ENA]
¢þ
>WENV181364417
OFOV01000615
[OFOV] sediment metagenome; Lake sediment
861
779
-
Leu
CAA
[ENA]
¢þ
>WENV181364427
OFOV01001045
[OFOV] sediment metagenome; Lake sediment
889
964
+
Ala
TGC
[ENA]
¢þ
>WENV181364429
OFOV01001074
[OFOV] sediment metagenome; Lake sediment
904
988
+
Leu
TAG
[ENA]
¢þ
>WENV181364367
OFOV01000016
[OFOV] sediment metagenome; Lake sediment
912
836
-
Val
CAC
[ENA]
¢þ
>WENV181364430
OFOV01001089
[OFOV] sediment metagenome; Lake sediment
948
1025
+
Glu
TTC
[ENA]
¢þ
>WENV181364408
OFOV01000484
[OFOV] sediment metagenome; Lake sediment
970
1052
+
Tyr
GTA
[ENA]
¢þ
>WENV181364395
OFOV01000235
[OFOV] sediment metagenome; Lake sediment
1025
1099
+
Val
CAC
[ENA]
¢þ
>WENV181364398
OFOV01000464
[OFOV] sediment metagenome; Lake sediment
1025
1112
+
Asn
GTT
[ENA]
¢þ
>WENV181364416
OFOV01000615
[OFOV] sediment metagenome; Lake sediment
1035
952
-
Leu
TAG
[ENA]
¢þ
>WENV181364399
OFOV01000464
[OFOV] sediment metagenome; Lake sediment
1120
1195
+
Gln
TTG
[ENA]
¢þ
>WENV181364413
OFOV01000582
[OFOV] sediment metagenome; Lake sediment
1289
1364
+
Lys
TTT
[ENA]
¢þ
>WENV181364400
OFOV01000464
[OFOV] sediment metagenome; Lake sediment
1479
1549
+
Gln
CTG
[ENA]
¢þ
>WENV181364394
OFOV01000227
[OFOV] sediment metagenome; Lake sediment
1507
1581
+
Asn
GTT
[ENA]
¢þ
>WENV181364409
OFOV01000484
[OFOV] sediment metagenome; Lake sediment
1642
1716
+
Lys
TTT
[ENA]
¢þ
>WENV181364412
OFOV01000526
[OFOV] sediment metagenome; Lake sediment
1680
1602
-
Arg
TCG
[ENA]
¢þ
>WENV181364410
OFOV01000484
[OFOV] sediment metagenome; Lake sediment
1731
1801
+
Lys
CTT
[ENA]
¢þ
>WENV181364393
OFOV01000201
[OFOV] sediment metagenome; Lake sediment
1754
1831
+
Pro
CGG
[ENA]
¢þ
>WENV181364366
OFOV01000016
[OFOV] sediment metagenome; Lake sediment
1910
1827
-
Ser
CGA
[ENA]
¢þ
>WENV181364377
OFOV01000049
[OFOV] sediment metagenome; Lake sediment
1964
1887
-
Ala
GGC
[ENA]
¢þ
>WENV181364376
OFOV01000049
[OFOV] sediment metagenome; Lake sediment
2073
2001
-
Ala
CGC
[ENA]
¢þ
>WENV181364365
OFOV01000016
[OFOV] sediment metagenome; Lake sediment
2140
2069
-
Lys
CTT
[ENA]
¢þ
>WENV181364396
OFOV01000259
[OFOV] sediment metagenome; Lake sediment
2324
2411
+
Ser
TGA
[ENA]
¢þ
>WENV181364383
OFOV01000139
[OFOV] sediment metagenome; Lake sediment
2338
2265
-
Gln
TTG
[ENA]
¢þ
>WENV181364382
OFOV01000139
[OFOV] sediment metagenome; Lake sediment
2486
2412
-
His
GTG
[ENA]
¢þ
>WENV181364389
OFOV01000183
[OFOV] sediment metagenome; Lake sediment
2691
2620
-
Asp
GTC
[ENA]
¢þ
>WENV181364381
OFOV01000139
[OFOV] sediment metagenome; Lake sediment
2736
2660
-
Met
CAT
[ENA]
¢þ
>WENV181364364
OFOV01000016
[OFOV] sediment metagenome; Lake sediment
2850
2774
-
Arg
CCT
[ENA]
¢þ
>WENV181364387
OFOV01000182
[OFOV] sediment metagenome; Lake sediment
3156
3067
-
Ser
GCT
[ENA]
¢þ
>WENV181364388
OFOV01000183
[OFOV] sediment metagenome; Lake sediment
3181
3095
-
Ser
AGA
[ENA]
¢þ
>WENV181364378
OFOV01000100
[OFOV] sediment metagenome; Lake sediment
3468
3554
+
Asn
GTT
[ENA]
¢þ
>WENV181364379
OFOV01000100
[OFOV] sediment metagenome; Lake sediment
3771
3844
+
Gln
TTG
[ENA]
¢þ
>WENV181364380
OFOV01000100
[OFOV] sediment metagenome; Lake sediment
3855
3929
+
Gln
CTG
[ENA]
¢þ
>WENV181364375
OFOV01000049
[OFOV] sediment metagenome; Lake sediment
4393
4318
-
His
GTG
[ENA]
¢þ
>WENV181364363
OFOV01000016
[OFOV] sediment metagenome; Lake sediment
5125
5051
-
Gly
TCC
[ENA]
¢þ
>WENV181364374
OFOV01000049
[OFOV] sediment metagenome; Lake sediment
5589
5502
-
Leu
TAA
[ENA]
¢þ
>WENV181364362
OFOV01000016
[OFOV] sediment metagenome; Lake sediment
5864
5789
-
Gly
CCC
[ENA]
¢þ
>WENV181364373
OFOV01000049
[OFOV] sediment metagenome; Lake sediment
6576
6502
-
Ala
TGC
[ENA]
¢þ
>WENV181364361
OFOV01000016
[OFOV] sediment metagenome; Lake sediment
6619
6545
-
Gly
GCC
[ENA]
¢þ
>WENV181364355
OFOV01000002
[OFOV] sediment metagenome; Lake sediment
6894
6969
+
Asp
ATC
[ENA]
¢þ
>WENV181364372
OFOV01000049
[OFOV] sediment metagenome; Lake sediment
7248
7173
-
Trp
CCA
[ENA]
¢þ
>WENV181364360
OFOV01000016
[OFOV] sediment metagenome; Lake sediment
7391
7313
-
Arg
TCT
[ENA]
¢þ
>WENV181364359
OFOV01000016
[OFOV] sediment metagenome; Lake sediment
8902
8828
-
Glu
TTC
[ENA]
¢þ
>WENV181364354
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
12987
12903
-
Leu
CAA
[ENA]
¢þ
>WENV181364353
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
13125
13042
-
Leu
TAA
[ENA]
¢þ
>WENV181364352
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
13236
13152
-
Tyr
GTA
[ENA]
¢þ
>WENV181364351
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
13337
13248
-
Leu
CAG
[ENA]
¢þ
>WENV181364350
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
13584
13498
-
Leu
GAG
[ENA]
¢þ
>WENV181364349
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
13858
13778
-
Leu
TAG
[ENA]
¢þ
>WENV181364348
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
17855
17770
-
Ser
GGA
[ENA]
¢þ
>WENV181364347
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
18662
18585
-
His
GTG
[ENA]
¢þ
>WENV181364346
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
18853
18770
-
Ser
TGA
[ENA]
¢þ
>WENV181364345
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
18933
18861
-
Thr
GGT
[ENA]
¢þ
>WENV181364344
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
19021
18947
-
Trp
CCA
[ENA]
¢þ
>WENV181364356
OFOV01000002
[OFOV] sediment metagenome; Lake sediment
19708
19636
-
Lys
TTT
[ENA]
¢þ
>WENV181364358
OFOV01000012
[OFOV] sediment metagenome; Lake sediment
22947
22874
-
Gln
CTG
[ENA]
¢þ
>WENV181364357
OFOV01000012
[OFOV] sediment metagenome; Lake sediment
23253
23181
-
Trp
CCA
[ENA]
¢þ
>WENV181364343
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
32024
31940
-
Ser
GCT
[ENA]
¢þ
>WENV181364342
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
32654
32567
-
Ile
GAT
[ENA]
¢þ
>WENV181364341
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
34508
34432
-
Phe
GAA
[ENA]
¢þ
>WENV181364340
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
38504
38426
-
Pro
GGG
[ENA]
¢þ
>WENV181364339
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
38590
38515
-
Gln
CTG
[ENA]
¢þ
>WENV181364338
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
38679
38604
-
Pro
TGG
[ENA]
¢þ
>WENV181364337
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
50291
50213
-
Lys
CTT
[ENA]
¢þ
>WENV181364336
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
52914
52839
-
Gly
GCC
[ENA]
¢þ
>WENV181364335
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
53093
53022
-
Arg
ACG
[ENA]
¢þ
>WENV181364334
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
53442
53370
-
Thr
CGT
[ENA]
¢þ
>WENV181364333
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
53655
53582
-
Gly
TCC
[ENA]
¢þ
>WENV181364332
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
55100
55024
-
Met
CAT
[ENA]
¢þ
>WENV181364331
OFOV01000001
[OFOV] sediment metagenome; Lake sediment
55218
55145
-
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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