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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFOW] sediment metagenome; Lake sediment
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181364497
OFOW01000142
[OFOW] sediment metagenome; Lake sediment
64
139
+
Trp
CCA
[ENA]
¢þ
>WENV181364525
OFOW01003057
[OFOW] sediment metagenome; Lake sediment
122
49
-
Val
GAC
[ENA]
¢þ
>WENV181364521
OFOW01002926
[OFOW] sediment metagenome; Lake sediment
124
201
+
Arg
TCG
[ENA]
¢þ
>WENV181364523
OFOW01003055
[OFOW] sediment metagenome; Lake sediment
132
205
+
Pro
GGG
[ENA]
¢þ
>WENV181364520
OFOW01002640
[OFOW] sediment metagenome; Lake sediment
141
64
-
Val
TAC
[ENA]
¢þ
>WENV181364474
OFOW01000003
[OFOW] sediment metagenome; Lake sediment
147
58
-
Ser
GGA
[ENA]
¢þ
>WENV181364519
OFOW01002529
[OFOW] sediment metagenome; Lake sediment
162
90
-
His
GTG
[ENA]
¢þ
>WENV181364515
OFOW01001828
[OFOW] sediment metagenome; Lake sediment
164
90
-
Asn
GTT
[ENA]
¢þ
>WENV181364516
OFOW01001891
[OFOW] sediment metagenome; Lake sediment
170
97
-
Gly
CCC
[ENA]
¢þ
>WENV181364517
OFOW01002064
[OFOW] sediment metagenome; Lake sediment
190
103
-
Leu
TAG
[ENA]
¢þ
>WENV181364524
OFOW01003057
[OFOW] sediment metagenome; Lake sediment
197
125
-
Gly
TCC
[ENA]
¢þ
>WENV181364511
OFOW01000939
[OFOW] sediment metagenome; Lake sediment
242
166
-
Arg
TCT
[ENA]
¢þ
>WENV181364507
OFOW01000284
[OFOW] sediment metagenome; Lake sediment
300
227
-
Gly
TCC
[ENA]
¢þ
>WENV181364522
OFOW01003034
[OFOW] sediment metagenome; Lake sediment
347
275
-
Ala
CGC
[ENA]
¢þ
>WENV181364518
OFOW01002499
[OFOW] sediment metagenome; Lake sediment
386
461
+
Ala
CGC
[ENA]
¢þ
>WENV181364506
OFOW01000284
[OFOW] sediment metagenome; Lake sediment
455
370
-
Tyr
GTA
[ENA]
¢þ
>WENV181364510
OFOW01000618
[OFOW] sediment metagenome; Lake sediment
498
594
+
SeC
TCA
[ENA]
¢þ
>WENV181364514
OFOW01001279
[OFOW] sediment metagenome; Lake sediment
583
670
+
Leu
CAG
[ENA]
¢þ
>WENV181364504
OFOW01000250
[OFOW] sediment metagenome; Lake sediment
737
663
-
Arg
CCT
[ENA]
¢þ
>WENV181364513
OFOW01001081
[OFOW] sediment metagenome; Lake sediment
809
734
-
His
GTG
[ENA]
¢þ
>WENV181364512
OFOW01000995
[OFOW] sediment metagenome; Lake sediment
942
1016
+
Phe
GAA
[ENA]
¢þ
>WENV181364509
OFOW01000435
[OFOW] sediment metagenome; Lake sediment
1417
1342
-
Lys
CTT
[ENA]
¢þ
>WENV181364495
OFOW01000124
[OFOW] sediment metagenome; Lake sediment
1576
1662
+
Leu
CAG
[ENA]
¢þ
>WENV181364501
OFOW01000247
[OFOW] sediment metagenome; Lake sediment
1679
1755
+
Ile2
CAT
[ENA]
¢þ
>WENV181364472
OFOW01000001
[OFOW] sediment metagenome; Lake sediment
1882
1957
+
Val
TAC
[ENA]
¢þ
>WENV181364502
OFOW01000247
[OFOW] sediment metagenome; Lake sediment
1960
2036
+
Arg
ACG
[ENA]
¢þ
>WENV181364505
OFOW01000273
[OFOW] sediment metagenome; Lake sediment
1997
1908
-
Ser
CGA
[ENA]
¢þ
>WENV181364508
OFOW01000303
[OFOW] sediment metagenome; Lake sediment
2058
1971
-
Ser
TGA
[ENA]
¢þ
>WENV181364498
OFOW01000150
[OFOW] sediment metagenome; Lake sediment
2443
2518
+
Asn
GTT
[ENA]
¢þ
>WENV181364492
OFOW01000068
[OFOW] sediment metagenome; Lake sediment
2749
2824
+
Lys
TTT
[ENA]
¢þ
>WENV181364499
OFOW01000201
[OFOW] sediment metagenome; Lake sediment
2878
2953
+
Arg
CCG
[ENA]
¢þ
>WENV181364503
OFOW01000248
[OFOW] sediment metagenome; Lake sediment
3092
3168
+
Met
CAT
[ENA]
¢þ
>WENV181364473
OFOW01000001
[OFOW] sediment metagenome; Lake sediment
3985
4060
+
His
GTG
[ENA]
¢þ
>WENV181364496
OFOW01000124
[OFOW] sediment metagenome; Lake sediment
4003
3927
-
Val
GAC
[ENA]
¢þ
>WENV181364500
OFOW01000220
[OFOW] sediment metagenome; Lake sediment
4197
4113
-
Leu
GAG
[ENA]
¢þ
>WENV181364484
OFOW01000027
[OFOW] sediment metagenome; Lake sediment
4443
4368
-
Phe
GAA
[ENA]
¢þ
>WENV181364487
OFOW01000058
[OFOW] sediment metagenome; Lake sediment
4523
4598
+
Ala
GGC
[ENA]
¢þ
>WENV181364488
OFOW01000058
[OFOW] sediment metagenome; Lake sediment
4632
4707
+
Glu
TTC
[ENA]
¢þ
>WENV181364489
OFOW01000058
[OFOW] sediment metagenome; Lake sediment
4800
4876
+
Asp
GTC
[ENA]
¢þ
>WENV181364493
OFOW01000077
[OFOW] sediment metagenome; Lake sediment
4805
4730
-
Thr
TGT
[ENA]
¢þ
>WENV181364475
OFOW01000004
[OFOW] sediment metagenome; Lake sediment
5104
5180
+
Ile
GAT
[ENA]
¢þ
>WENV181364476
OFOW01000004
[OFOW] sediment metagenome; Lake sediment
5205
5280
+
Ala
TGC
[ENA]
¢þ
>WENV181364491
OFOW01000063
[OFOW] sediment metagenome; Lake sediment
5781
5707
-
Val
CAC
[ENA]
¢þ
>WENV181364485
OFOW01000045
[OFOW] sediment metagenome; Lake sediment
6365
6441
+
Gln
TTG
[ENA]
¢þ
>WENV181364486
OFOW01000056
[OFOW] sediment metagenome; Lake sediment
6648
6575
-
Gly
CCC
[ENA]
¢þ
>WENV181364494
OFOW01000106
[OFOW] sediment metagenome; Lake sediment
7926
7850
-
Pro
CGG
[ENA]
¢þ
>WENV181364479
OFOW01000005
[OFOW] sediment metagenome; Lake sediment
8208
8115
-
Leu
TAA
[ENA]
¢þ
>WENV181364478
OFOW01000005
[OFOW] sediment metagenome; Lake sediment
8402
8327
-
Gly
GCC
[ENA]
¢þ
>WENV181364490
OFOW01000059
[OFOW] sediment metagenome; Lake sediment
9389
9465
+
fMet
CAT
[ENA]
¢þ
>WENV181364482
OFOW01000015
[OFOW] sediment metagenome; Lake sediment
9821
9897
+
Pro
GGG
[ENA]
¢þ
>WENV181364480
OFOW01000006
[OFOW] sediment metagenome; Lake sediment
10219
10295
+
Pro
TGG
[ENA]
¢þ
>WENV181364483
OFOW01000024
[OFOW] sediment metagenome; Lake sediment
11247
11339
+
Ser
GCT
[ENA]
¢þ
>WENV181364477
OFOW01000005
[OFOW] sediment metagenome; Lake sediment
14636
14550
-
Leu
TAG
[ENA]
¢þ
>WENV181364481
OFOW01000006
[OFOW] sediment metagenome; Lake sediment
19414
19490
+
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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