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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFOZ] sediment metagenome; Lake sediment
HIT:
54 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181364612
OFOZ01000318
[OFOZ] sediment metagenome; Lake sediment
23
98
+
Trp
CCA
[ENA]
¢þ
>WENV181364614
OFOZ01000530
[OFOZ] sediment metagenome; Lake sediment
54
127
+
Gly
TCC
[ENA]
¢þ
>WENV181364620
OFOZ01000726
[OFOZ] sediment metagenome; Lake sediment
64
140
+
Pro
CGG
[ENA]
¢þ
>WENV181364598
OFOZ01000094
[OFOZ] sediment metagenome; Lake sediment
151
75
-
Arg
ACG
[ENA]
¢þ
>WENV181364627
OFOZ01001892
[OFOZ] sediment metagenome; Lake sediment
188
264
+
Gln
TTG
[ENA]
¢þ
>WENV181364584
OFOZ01000031
[OFOZ] sediment metagenome; Lake sediment
208
284
+
Pro
TGG
[ENA]
¢þ
>WENV181364615
OFOZ01000530
[OFOZ] sediment metagenome; Lake sediment
219
290
+
Gln
TTG
[ENA]
¢þ
>WENV181364629
OFOZ01002406
[OFOZ] sediment metagenome; Lake sediment
221
305
+
Leu
CAG
[ENA]
¢þ
>WENV181364593
OFOZ01000075
[OFOZ] sediment metagenome; Lake sediment
368
443
+
Phe
GAA
[ENA]
¢þ
>WENV181364623
OFOZ01000860
[OFOZ] sediment metagenome; Lake sediment
423
351
-
Asn
GTT
[ENA]
¢þ
>WENV181364597
OFOZ01000094
[OFOZ] sediment metagenome; Lake sediment
432
356
-
Ile2
CAT
[ENA]
¢þ
>WENV181364624
OFOZ01001121
[OFOZ] sediment metagenome; Lake sediment
439
363
-
Arg
TCT
[ENA]
¢þ
>WENV181364628
OFOZ01001916
[OFOZ] sediment metagenome; Lake sediment
444
372
-
Arg
CCG
[ENA]
¢þ
>WENV181364625
OFOZ01001488
[OFOZ] sediment metagenome; Lake sediment
505
581
+
Lys
TTT
[ENA]
¢þ
>WENV181364626
OFOZ01001600
[OFOZ] sediment metagenome; Lake sediment
574
498
-
Pro
GGG
[ENA]
¢þ
>WENV181364622
OFOZ01000860
[OFOZ] sediment metagenome; Lake sediment
715
642
-
Val
TAC
[ENA]
¢þ
>WENV181364619
OFOZ01000695
[OFOZ] sediment metagenome; Lake sediment
768
852
+
Ser
GGA
[ENA]
¢þ
>WENV181364613
OFOZ01000443
[OFOZ] sediment metagenome; Lake sediment
830
926
+
SeC
TCA
[ENA]
¢þ
>WENV181364616
OFOZ01000530
[OFOZ] sediment metagenome; Lake sediment
885
969
+
Leu
CAA
[ENA]
¢þ
>WENV181364621
OFOZ01000860
[OFOZ] sediment metagenome; Lake sediment
900
818
-
Leu
TAA
[ENA]
¢þ
>WENV181364606
OFOZ01000152
[OFOZ] sediment metagenome; Lake sediment
972
1045
+
Gly
CCC
[ENA]
¢þ
>WENV181364618
OFOZ01000587
[OFOZ] sediment metagenome; Lake sediment
1139
1064
-
Ala
TGC
[ENA]
¢þ
>WENV181364617
OFOZ01000587
[OFOZ] sediment metagenome; Lake sediment
1240
1164
-
Ile
GAT
[ENA]
¢þ
>WENV181364609
OFOZ01000195
[OFOZ] sediment metagenome; Lake sediment
1408
1333
-
Thr
TGT
[ENA]
¢þ
>WENV181364605
OFOZ01000143
[OFOZ] sediment metagenome; Lake sediment
1508
1583
+
Lys
CTT
[ENA]
¢þ
>WENV181364610
OFOZ01000276
[OFOZ] sediment metagenome; Lake sediment
2266
2341
+
Val
TAC
[ENA]
¢þ
>WENV181364591
OFOZ01000059
[OFOZ] sediment metagenome; Lake sediment
2447
2522
+
Asn
GTT
[ENA]
¢þ
>WENV181364595
OFOZ01000084
[OFOZ] sediment metagenome; Lake sediment
2653
2728
+
Lys
TTT
[ENA]
¢þ
>WENV181364583
OFOZ01000030
[OFOZ] sediment metagenome; Lake sediment
2692
2617
-
Arg
CCG
[ENA]
¢þ
>WENV181364611
OFOZ01000276
[OFOZ] sediment metagenome; Lake sediment
4369
4444
+
His
GTG
[ENA]
¢þ
>WENV181364588
OFOZ01000043
[OFOZ] sediment metagenome; Lake sediment
4468
4560
+
Ser
GCT
[ENA]
¢þ
>WENV181364601
OFOZ01000128
[OFOZ] sediment metagenome; Lake sediment
5258
5333
+
Ala
GGC
[ENA]
¢þ
>WENV181364602
OFOZ01000128
[OFOZ] sediment metagenome; Lake sediment
5367
5442
+
Glu
TTC
[ENA]
¢þ
>WENV181364608
OFOZ01000182
[OFOZ] sediment metagenome; Lake sediment
5488
5564
+
Val
GAC
[ENA]
¢þ
>WENV181364603
OFOZ01000128
[OFOZ] sediment metagenome; Lake sediment
5535
5611
+
Asp
GTC
[ENA]
¢þ
>WENV181364604
OFOZ01000132
[OFOZ] sediment metagenome; Lake sediment
6358
6447
+
Ser
CGA
[ENA]
¢þ
>WENV181364607
OFOZ01000165
[OFOZ] sediment metagenome; Lake sediment
7637
7723
+
Leu
CAG
[ENA]
¢þ
>WENV181364599
OFOZ01000116
[OFOZ] sediment metagenome; Lake sediment
7892
7976
+
Leu
CAA
[ENA]
¢þ
>WENV181364600
OFOZ01000125
[OFOZ] sediment metagenome; Lake sediment
8558
8482
-
Gln
TTG
[ENA]
¢þ
>WENV181364596
OFOZ01000093
[OFOZ] sediment metagenome; Lake sediment
8935
9022
+
Ser
TGA
[ENA]
¢þ
>WENV181364589
OFOZ01000044
[OFOZ] sediment metagenome; Lake sediment
9081
9165
+
Leu
GAG
[ENA]
¢þ
>WENV181364585
OFOZ01000031
[OFOZ] sediment metagenome; Lake sediment
9403
9479
+
Arg
TCT
[ENA]
¢þ
>WENV181364578
OFOZ01000017
[OFOZ] sediment metagenome; Lake sediment
9427
9503
+
fMet
CAT
[ENA]
¢þ
>WENV181364590
OFOZ01000048
[OFOZ] sediment metagenome; Lake sediment
9685
9609
-
Pro
GGG
[ENA]
¢þ
>WENV181364594
OFOZ01000083
[OFOZ] sediment metagenome; Lake sediment
10252
10326
+
Val
CAC
[ENA]
¢þ
>WENV181364582
OFOZ01000024
[OFOZ] sediment metagenome; Lake sediment
11916
11823
-
Leu
TAA
[ENA]
¢þ
>WENV181364581
OFOZ01000024
[OFOZ] sediment metagenome; Lake sediment
12110
12035
-
Gly
GCC
[ENA]
¢þ
>WENV181364587
OFOZ01000038
[OFOZ] sediment metagenome; Lake sediment
12763
12839
+
Met
CAT
[ENA]
¢þ
>WENV181364592
OFOZ01000062
[OFOZ] sediment metagenome; Lake sediment
13145
13234
+
Ser
GGA
[ENA]
¢þ
>WENV181364579
OFOZ01000018
[OFOZ] sediment metagenome; Lake sediment
13596
13672
+
Pro
CGG
[ENA]
¢þ
>WENV181364586
OFOZ01000036
[OFOZ] sediment metagenome; Lake sediment
13950
14024
+
Arg
CCT
[ENA]
¢þ
>WENV181364580
OFOZ01000024
[OFOZ] sediment metagenome; Lake sediment
18344
18258
-
Leu
TAG
[ENA]
¢þ
>WENV181364577
OFOZ01000010
[OFOZ] sediment metagenome; Lake sediment
24181
24108
-
Gly
TCC
[ENA]
¢þ
>WENV181364576
OFOZ01000010
[OFOZ] sediment metagenome; Lake sediment
24336
24251
-
Tyr
GTA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK