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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFPD] sediment metagenome; Lake sediment
HIT:
56 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181364803
OFPD01000739
[OFPD] sediment metagenome; Lake sediment
152
236
+
Leu
GAG
[ENA]
¢þ
>WENV181364807
OFPD01001771
[OFPD] sediment metagenome; Lake sediment
171
95
-
fMet
CAT
[ENA]
¢þ
>WENV181364809
OFPD01001963
[OFPD] sediment metagenome; Lake sediment
194
268
+
Arg
CCG
[ENA]
¢þ
>WENV181364812
OFPD01002217
[OFPD] sediment metagenome; Lake sediment
250
322
+
Thr
TGT
[ENA]
¢þ
>WENV181364804
OFPD01000908
[OFPD] sediment metagenome; Lake sediment
295
222
-
Gly
CCC
[ENA]
¢þ
>WENV181364805
OFPD01001015
[OFPD] sediment metagenome; Lake sediment
318
242
-
Val
GAC
[ENA]
¢þ
>WENV181364789
OFPD01000057
[OFPD] sediment metagenome; Lake sediment
348
424
+
Pro
TGG
[ENA]
¢þ
>WENV181364820
OFPD01004741
[OFPD] sediment metagenome; Lake sediment
361
285
-
Arg
TCT
[ENA]
¢þ
>WENV181364816
OFPD01003115
[OFPD] sediment metagenome; Lake sediment
426
501
+
Ala
GGC
[ENA]
¢þ
>WENV181364802
OFPD01000573
[OFPD] sediment metagenome; Lake sediment
481
565
+
Leu
CAG
[ENA]
¢þ
>WENV181364814
OFPD01002428
[OFPD] sediment metagenome; Lake sediment
503
588
+
Tyr
GTA
[ENA]
¢þ
>WENV181364813
OFPD01002231
[OFPD] sediment metagenome; Lake sediment
517
592
+
Lys
CTT
[ENA]
¢þ
>WENV181364817
OFPD01003115
[OFPD] sediment metagenome; Lake sediment
569
644
+
Glu
TTC
[ENA]
¢þ
>WENV181364819
OFPD01003835
[OFPD] sediment metagenome; Lake sediment
582
507
-
Val
TAC
[ENA]
¢þ
>WENV181364815
OFPD01002428
[OFPD] sediment metagenome; Lake sediment
666
739
+
Gly
TCC
[ENA]
¢þ
>WENV181364818
OFPD01003115
[OFPD] sediment metagenome; Lake sediment
715
791
+
Asp
GTC
[ENA]
¢þ
>WENV181364806
OFPD01001707
[OFPD] sediment metagenome; Lake sediment
752
827
+
His
GTG
[ENA]
¢þ
>WENV181364811
OFPD01002182
[OFPD] sediment metagenome; Lake sediment
883
797
-
Ser
TGA
[ENA]
¢þ
>WENV181364810
OFPD01002146
[OFPD] sediment metagenome; Lake sediment
884
976
+
Ser
GCT
[ENA]
¢þ
>WENV181364808
OFPD01001922
[OFPD] sediment metagenome; Lake sediment
1037
963
-
Arg
CCT
[ENA]
¢þ
>WENV181364801
OFPD01000556
[OFPD] sediment metagenome; Lake sediment
1082
993
-
Ser
CGA
[ENA]
¢þ
>WENV181364800
OFPD01000365
[OFPD] sediment metagenome; Lake sediment
1217
1141
-
Pro
GGG
[ENA]
¢þ
>WENV181364794
OFPD01000164
[OFPD] sediment metagenome; Lake sediment
1626
1550
-
Arg
ACG
[ENA]
¢þ
>WENV181364796
OFPD01000284
[OFPD] sediment metagenome; Lake sediment
1770
1694
-
Gln
TTG
[ENA]
¢þ
>WENV181364799
OFPD01000364
[OFPD] sediment metagenome; Lake sediment
1867
1792
-
Ala
CGC
[ENA]
¢þ
>WENV181364790
OFPD01000086
[OFPD] sediment metagenome; Lake sediment
2139
2064
-
Trp
CCA
[ENA]
¢þ
>WENV181364798
OFPD01000362
[OFPD] sediment metagenome; Lake sediment
2164
2089
-
Phe
GAA
[ENA]
¢þ
>WENV181364797
OFPD01000341
[OFPD] sediment metagenome; Lake sediment
2254
2168
-
Leu
TAG
[ENA]
¢þ
>WENV181364795
OFPD01000201
[OFPD] sediment metagenome; Lake sediment
2292
2218
-
Val
CAC
[ENA]
¢þ
>WENV181364791
OFPD01000150
[OFPD] sediment metagenome; Lake sediment
2382
2457
+
Gly
GCC
[ENA]
¢þ
>WENV181364792
OFPD01000150
[OFPD] sediment metagenome; Lake sediment
2550
2623
+
Cys
GCA
[ENA]
¢þ
>WENV181364793
OFPD01000150
[OFPD] sediment metagenome; Lake sediment
2710
2802
+
Leu
TAA
[ENA]
¢þ
>WENV181364788
OFPD01000008
[OFPD] sediment metagenome; Lake sediment
5651
5576
-
Ala
TGC
[ENA]
¢þ
>WENV181364787
OFPD01000008
[OFPD] sediment metagenome; Lake sediment
5777
5701
-
Ile
GAT
[ENA]
¢þ
>WENV181364778
OFPD01000002
[OFPD] sediment metagenome; Lake sediment
34395
34468
+
Trp
CCA
[ENA]
¢þ
>WENV181364779
OFPD01000002
[OFPD] sediment metagenome; Lake sediment
34553
34627
+
Gln
CTG
[ENA]
¢þ
>WENV181364780
OFPD01000002
[OFPD] sediment metagenome; Lake sediment
34717
34792
+
fMet
CAT
[ENA]
¢þ
>WENV181364781
OFPD01000002
[OFPD] sediment metagenome; Lake sediment
34794
34867
+
Ala
TGC
[ENA]
¢þ
>WENV181364782
OFPD01000002
[OFPD] sediment metagenome; Lake sediment
34876
34959
+
Tyr
GTA
[ENA]
¢þ
>WENV181364783
OFPD01000002
[OFPD] sediment metagenome; Lake sediment
35123
35196
+
Ile
GAT
[ENA]
¢þ
>WENV181364784
OFPD01000002
[OFPD] sediment metagenome; Lake sediment
35292
35367
+
Pro
GGG
[ENA]
¢þ
>WENV181364785
OFPD01000002
[OFPD] sediment metagenome; Lake sediment
35369
35442
+
Val
GAC
[ENA]
¢þ
>WENV181364786
OFPD01000002
[OFPD] sediment metagenome; Lake sediment
35556
35629
+
Thr
TGT
[ENA]
¢þ
>WENV181364777
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
104859
104783
-
Arg
ACG
[ENA]
¢þ
>WENV181364776
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
105301
105227
-
Arg
CCG
[ENA]
¢þ
>WENV181364775
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
105540
105467
-
Met
CAT
[ENA]
¢þ
>WENV181364774
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
105621
105547
-
Pro
CGG
[ENA]
¢þ
>WENV181364773
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
105818
105732
-
Leu
GAG
[ENA]
¢þ
>WENV181364772
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
105988
105901
-
Leu
CAG
[ENA]
¢þ
>WENV181364771
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
106083
105999
-
Leu
TAG
[ENA]
¢þ
>WENV181364770
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
106169
106085
-
Leu
CAA
[ENA]
¢þ
>WENV181364769
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
107107
107034
-
Glu
CTC
[ENA]
¢þ
>WENV181364768
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
107260
107187
-
Asn
GTT
[ENA]
¢þ
>WENV181364767
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
107562
107477
-
Ser
GCT
[ENA]
¢þ
>WENV181364766
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
107649
107564
-
Ser
GGA
[ENA]
¢þ
>WENV181364765
OFPD01000001
[OFPD] sediment metagenome; Lake sediment
107844
107753
-
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK