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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OFPI] sediment metagenome; Lake sediment
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181365063
OFPI01000181
[OFPI] sediment metagenome; Lake sediment
298
225
-
Gly
TCC
[ENA]
¢þ
>WENV181365069
OFPI01000544
[OFPI] sediment metagenome; Lake sediment
378
454
+
Pro
CGG
[ENA]
¢þ
>WENV181365065
OFPI01000335
[OFPI] sediment metagenome; Lake sediment
431
507
+
Ile
GAT
[ENA]
¢þ
>WENV181365062
OFPI01000181
[OFPI] sediment metagenome; Lake sediment
453
368
-
Tyr
GTA
[ENA]
¢þ
>WENV181365067
OFPI01000474
[OFPI] sediment metagenome; Lake sediment
538
627
+
Ser
GCT
[ENA]
¢þ
>WENV181365066
OFPI01000335
[OFPI] sediment metagenome; Lake sediment
577
652
+
Ala
TGC
[ENA]
¢þ
>WENV181365068
OFPI01000474
[OFPI] sediment metagenome; Lake sediment
641
716
+
Met
CAT
[ENA]
¢þ
>WENV181365056
OFPI01000066
[OFPI] sediment metagenome; Lake sediment
965
873
-
Ser
GCT
[ENA]
¢þ
>WENV181365034
OFPI01000009
[OFPI] sediment metagenome; Lake sediment
2480
2555
+
Asn
GTT
[ENA]
¢þ
>WENV181365064
OFPI01000201
[OFPI] sediment metagenome; Lake sediment
2823
2727
-
SeC
TCA
[ENA]
¢þ
>WENV181365059
OFPI01000094
[OFPI] sediment metagenome; Lake sediment
3385
3460
+
Lys
CTT
[ENA]
¢þ
>WENV181365058
OFPI01000075
[OFPI] sediment metagenome; Lake sediment
4173
4248
+
Phe
GAA
[ENA]
¢þ
>WENV181365027
OFPI01000002
[OFPI] sediment metagenome; Lake sediment
4513
4437
-
Met
CAT
[ENA]
¢þ
>WENV181365055
OFPI01000065
[OFPI] sediment metagenome; Lake sediment
5043
4967
-
Gln
TTG
[ENA]
¢þ
>WENV181365050
OFPI01000056
[OFPI] sediment metagenome; Lake sediment
5235
5310
+
Ala
GGC
[ENA]
¢þ
>WENV181365051
OFPI01000056
[OFPI] sediment metagenome; Lake sediment
5344
5419
+
Glu
TTC
[ENA]
¢þ
>WENV181365052
OFPI01000056
[OFPI] sediment metagenome; Lake sediment
5512
5588
+
Asp
GTC
[ENA]
¢þ
>WENV181365061
OFPI01000120
[OFPI] sediment metagenome; Lake sediment
7146
7220
+
Arg
CCT
[ENA]
¢þ
>WENV181365047
OFPI01000032
[OFPI] sediment metagenome; Lake sediment
8859
8766
-
Leu
TAA
[ENA]
¢þ
>WENV181365046
OFPI01000032
[OFPI] sediment metagenome; Lake sediment
9053
8978
-
Gly
GCC
[ENA]
¢þ
>WENV181365041
OFPI01000025
[OFPI] sediment metagenome; Lake sediment
9420
9496
+
fMet
CAT
[ENA]
¢þ
>WENV181365038
OFPI01000016
[OFPI] sediment metagenome; Lake sediment
10218
10292
+
Val
CAC
[ENA]
¢þ
>WENV181365033
OFPI01000008
[OFPI] sediment metagenome; Lake sediment
11289
11213
-
Pro
CGG
[ENA]
¢þ
>WENV181365040
OFPI01000024
[OFPI] sediment metagenome; Lake sediment
11298
11223
-
Lys
TTT
[ENA]
¢þ
>WENV181365060
OFPI01000095
[OFPI] sediment metagenome; Lake sediment
13008
12933
-
Trp
CCA
[ENA]
¢þ
>WENV181365057
OFPI01000069
[OFPI] sediment metagenome; Lake sediment
13221
13148
-
Gly
CCC
[ENA]
¢þ
>WENV181365037
OFPI01000013
[OFPI] sediment metagenome; Lake sediment
14286
14197
-
Ser
CGA
[ENA]
¢þ
>WENV181365045
OFPI01000032
[OFPI] sediment metagenome; Lake sediment
15287
15201
-
Leu
TAG
[ENA]
¢þ
>WENV181365053
OFPI01000065
[OFPI] sediment metagenome; Lake sediment
16640
16716
+
Ile2
CAT
[ENA]
¢þ
>WENV181365054
OFPI01000065
[OFPI] sediment metagenome; Lake sediment
16921
16997
+
Arg
ACG
[ENA]
¢þ
>WENV181365039
OFPI01000017
[OFPI] sediment metagenome; Lake sediment
17852
17936
+
Leu
CAA
[ENA]
¢þ
>WENV181365048
OFPI01000037
[OFPI] sediment metagenome; Lake sediment
22307
22396
+
Ser
GGA
[ENA]
¢þ
>WENV181365029
OFPI01000006
[OFPI] sediment metagenome; Lake sediment
22850
22926
+
Pro
GGG
[ENA]
¢þ
>WENV181365049
OFPI01000043
[OFPI] sediment metagenome; Lake sediment
23410
23497
+
Ser
TGA
[ENA]
¢þ
>WENV181365036
OFPI01000011
[OFPI] sediment metagenome; Lake sediment
25971
25895
-
Arg
TCT
[ENA]
¢þ
>WENV181365043
OFPI01000026
[OFPI] sediment metagenome; Lake sediment
28103
28028
-
His
GTG
[ENA]
¢þ
>WENV181365042
OFPI01000026
[OFPI] sediment metagenome; Lake sediment
30206
30131
-
Val
TAC
[ENA]
¢þ
>WENV181365030
OFPI01000007
[OFPI] sediment metagenome; Lake sediment
30217
30293
+
Val
GAC
[ENA]
¢þ
>WENV181365044
OFPI01000028
[OFPI] sediment metagenome; Lake sediment
31642
31717
+
Arg
CCG
[ENA]
¢þ
>WENV181365032
OFPI01000007
[OFPI] sediment metagenome; Lake sediment
32644
32558
-
Leu
CAG
[ENA]
¢þ
>WENV181365031
OFPI01000007
[OFPI] sediment metagenome; Lake sediment
32862
32776
-
Leu
CAG
[ENA]
¢þ
>WENV181365035
OFPI01000011
[OFPI] sediment metagenome; Lake sediment
35166
35090
-
Pro
TGG
[ENA]
¢þ
>WENV181365028
OFPI01000005
[OFPI] sediment metagenome; Lake sediment
50399
50483
+
Leu
GAG
[ENA]
¢þ
>WENV181365026
OFPI01000002
[OFPI] sediment metagenome; Lake sediment
80144
80219
+
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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