This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFPN] sediment metagenome; Lake sediment
HIT:
44 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181365303
OFPN01000439
[OFPN] sediment metagenome; Lake sediment
307
234
-
Gly
CCC
[ENA]
¢þ
>WENV181365301
OFPN01000066
[OFPN] sediment metagenome; Lake sediment
941
1014
+
Gly
CCC
[ENA]
¢þ
>WENV181365288
OFPN01000020
[OFPN] sediment metagenome; Lake sediment
1425
1350
-
Thr
TGT
[ENA]
¢þ
>WENV181365290
OFPN01000037
[OFPN] sediment metagenome; Lake sediment
2061
1974
-
Ser
TGA
[ENA]
¢þ
>WENV181365300
OFPN01000058
[OFPN] sediment metagenome; Lake sediment
2705
2631
-
Arg
CCT
[ENA]
¢þ
>WENV181365302
OFPN01000095
[OFPN] sediment metagenome; Lake sediment
2946
2872
-
Pro
TGG
[ENA]
¢þ
>WENV181365292
OFPN01000050
[OFPN] sediment metagenome; Lake sediment
9185
9260
+
Ala
GGC
[ENA]
¢þ
>WENV181365293
OFPN01000050
[OFPN] sediment metagenome; Lake sediment
9294
9369
+
Glu
TTC
[ENA]
¢þ
>WENV181365294
OFPN01000050
[OFPN] sediment metagenome; Lake sediment
9462
9538
+
Asp
GTC
[ENA]
¢þ
>WENV181365297
OFPN01000051
[OFPN] sediment metagenome; Lake sediment
10623
10547
-
Gln
TTG
[ENA]
¢þ
>WENV181365271
OFPN01000008
[OFPN] sediment metagenome; Lake sediment
11309
11233
-
Pro
CGG
[ENA]
¢þ
>WENV181365276
OFPN01000011
[OFPN] sediment metagenome; Lake sediment
13026
12951
-
Trp
CCA
[ENA]
¢þ
>WENV181365275
OFPN01000011
[OFPN] sediment metagenome; Lake sediment
14486
14413
-
Gly
TCC
[ENA]
¢þ
>WENV181365274
OFPN01000011
[OFPN] sediment metagenome; Lake sediment
14641
14556
-
Tyr
GTA
[ENA]
¢þ
>WENV181365299
OFPN01000056
[OFPN] sediment metagenome; Lake sediment
19039
19115
+
Met
CAT
[ENA]
¢þ
>WENV181365298
OFPN01000052
[OFPN] sediment metagenome; Lake sediment
20673
20598
-
Phe
GAA
[ENA]
¢þ
>WENV181365295
OFPN01000051
[OFPN] sediment metagenome; Lake sediment
22220
22296
+
Ile2
CAT
[ENA]
¢þ
>WENV181365296
OFPN01000051
[OFPN] sediment metagenome; Lake sediment
22501
22577
+
Arg
ACG
[ENA]
¢þ
>WENV181365264
OFPN01000003
[OFPN] sediment metagenome; Lake sediment
28528
28612
+
Leu
CAA
[ENA]
¢þ
>WENV181365286
OFPN01000017
[OFPN] sediment metagenome; Lake sediment
29504
29580
+
fMet
CAT
[ENA]
¢þ
>WENV181365289
OFPN01000022
[OFPN] sediment metagenome; Lake sediment
30074
29985
-
Ser
GGA
[ENA]
¢þ
>WENV181365272
OFPN01000010
[OFPN] sediment metagenome; Lake sediment
30322
30397
+
Lys
CTT
[ENA]
¢þ
>WENV181365280
OFPN01000016
[OFPN] sediment metagenome; Lake sediment
30475
30567
+
Ser
GCT
[ENA]
¢þ
>WENV181365291
OFPN01000041
[OFPN] sediment metagenome; Lake sediment
30687
30762
+
Arg
CCG
[ENA]
¢þ
>WENV181365287
OFPN01000019
[OFPN] sediment metagenome; Lake sediment
32538
32463
-
Lys
TTT
[ENA]
¢þ
>WENV181365270
OFPN01000006
[OFPN] sediment metagenome; Lake sediment
33147
33072
-
Ala
TGC
[ENA]
¢þ
>WENV181365269
OFPN01000006
[OFPN] sediment metagenome; Lake sediment
33248
33172
-
Ile
GAT
[ENA]
¢þ
>WENV181365268
OFPN01000004
[OFPN] sediment metagenome; Lake sediment
34616
34542
-
Val
CAC
[ENA]
¢þ
>WENV181365273
OFPN01000010
[OFPN] sediment metagenome; Lake sediment
41045
41141
+
SeC
TCA
[ENA]
¢þ
>WENV181365281
OFPN01000016
[OFPN] sediment metagenome; Lake sediment
46982
47068
+
Leu
TAG
[ENA]
¢þ
>WENV181365278
OFPN01000014
[OFPN] sediment metagenome; Lake sediment
51488
51563
+
Val
TAC
[ENA]
¢þ
>WENV181365282
OFPN01000016
[OFPN] sediment metagenome; Lake sediment
53216
53291
+
Gly
GCC
[ENA]
¢þ
>WENV181365283
OFPN01000016
[OFPN] sediment metagenome; Lake sediment
53366
53439
+
Cys
GCA
[ENA]
¢þ
>WENV181365284
OFPN01000016
[OFPN] sediment metagenome; Lake sediment
53448
53523
+
Gly
GCC
[ENA]
¢þ
>WENV181365279
OFPN01000014
[OFPN] sediment metagenome; Lake sediment
53591
53666
+
His
GTG
[ENA]
¢þ
>WENV181365285
OFPN01000016
[OFPN] sediment metagenome; Lake sediment
53642
53735
+
Leu
TAA
[ENA]
¢þ
>WENV181365277
OFPN01000013
[OFPN] sediment metagenome; Lake sediment
54310
54235
-
Asn
GTT
[ENA]
¢þ
>WENV181365260
OFPN01000001
[OFPN] sediment metagenome; Lake sediment
70284
70370
+
Leu
CAG
[ENA]
¢þ
>WENV181365263
OFPN01000002
[OFPN] sediment metagenome; Lake sediment
71334
71410
+
Pro
GGG
[ENA]
¢þ
>WENV181365262
OFPN01000001
[OFPN] sediment metagenome; Lake sediment
72711
72635
-
Val
GAC
[ENA]
¢þ
>WENV181365267
OFPN01000004
[OFPN] sediment metagenome; Lake sediment
95629
95553
-
Arg
TCT
[ENA]
¢þ
>WENV181365266
OFPN01000004
[OFPN] sediment metagenome; Lake sediment
104824
104748
-
Pro
TGG
[ENA]
¢þ
>WENV181365265
OFPN01000003
[OFPN] sediment metagenome; Lake sediment
127301
127390
+
Ser
CGA
[ENA]
¢þ
>WENV181365261
OFPN01000001
[OFPN] sediment metagenome; Lake sediment
159890
159806
-
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK