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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OFPP] sediment metagenome; Lake sediment
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181365377
OFPP01001290
[OFPP] sediment metagenome; Lake sediment
58
131
+
Gly
CCC
[ENA]
¢þ
>WENV181365366
OFPP01000242
[OFPP] sediment metagenome; Lake sediment
62
148
+
Leu
TAG
[ENA]
¢þ
>WENV181365372
OFPP01000603
[OFPP] sediment metagenome; Lake sediment
257
333
+
Ile
GAT
[ENA]
¢þ
>WENV181365382
OFPP01002253
[OFPP] sediment metagenome; Lake sediment
268
357
+
Ser
CGA
[ENA]
¢þ
>WENV181365376
OFPP01001008
[OFPP] sediment metagenome; Lake sediment
276
352
+
Gln
TTG
[ENA]
¢þ
>WENV181365379
OFPP01001600
[OFPP] sediment metagenome; Lake sediment
295
199
-
SeC
TCA
[ENA]
¢þ
>WENV181365364
OFPP01000037
[OFPP] sediment metagenome; Lake sediment
339
413
+
Val
CAC
[ENA]
¢þ
>WENV181365374
OFPP01000797
[OFPP] sediment metagenome; Lake sediment
347
261
-
Leu
TAA
[ENA]
¢þ
>WENV181365375
OFPP01000909
[OFPP] sediment metagenome; Lake sediment
355
280
-
Val
TAC
[ENA]
¢þ
>WENV181365373
OFPP01000603
[OFPP] sediment metagenome; Lake sediment
364
439
+
Ala
TGC
[ENA]
¢þ
>WENV181365380
OFPP01001792
[OFPP] sediment metagenome; Lake sediment
393
318
-
Arg
CCG
[ENA]
¢þ
>WENV181365367
OFPP01000287
[OFPP] sediment metagenome; Lake sediment
422
329
-
Leu
TAA
[ENA]
¢þ
>WENV181365370
OFPP01000521
[OFPP] sediment metagenome; Lake sediment
432
357
-
Glu
TTC
[ENA]
¢þ
>WENV181365381
OFPP01002138
[OFPP] sediment metagenome; Lake sediment
484
409
-
Phe
GAA
[ENA]
¢þ
>WENV181365371
OFPP01000589
[OFPP] sediment metagenome; Lake sediment
526
602
+
Pro
CGG
[ENA]
¢þ
>WENV181365369
OFPP01000521
[OFPP] sediment metagenome; Lake sediment
541
466
-
Ala
GGC
[ENA]
¢þ
>WENV181365378
OFPP01001534
[OFPP] sediment metagenome; Lake sediment
577
485
-
Ser
GCT
[ENA]
¢þ
>WENV181365368
OFPP01000384
[OFPP] sediment metagenome; Lake sediment
682
606
-
Val
GAC
[ENA]
¢þ
>WENV181365365
OFPP01000072
[OFPP] sediment metagenome; Lake sediment
1707
1791
+
Leu
TAA
[ENA]
¢þ
>WENV181365362
OFPP01000013
[OFPP] sediment metagenome; Lake sediment
2599
2675
+
Ile
GAT
[ENA]
¢þ
>WENV181365363
OFPP01000013
[OFPP] sediment metagenome; Lake sediment
2700
2775
+
Ala
TGC
[ENA]
¢þ
>WENV181365361
OFPP01000011
[OFPP] sediment metagenome; Lake sediment
6288
6363
+
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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