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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OFPU] freshwater metagenome; Freshwater Lake
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181367128
OFPU01000522
[OFPU] freshwater metagenome; Freshwater Lake
96
169
+
Asn
GTT
[ENA]
¢þ
>WENV181367131
OFPU01000615
[OFPU] freshwater metagenome; Freshwater Lake
127
202
+
Arg
CCG
[ENA]
¢þ
>WENV181367126
OFPU01000446
[OFPU] freshwater metagenome; Freshwater Lake
140
68
-
Arg
CCG
[ENA]
¢þ
>WENV181367135
OFPU01001088
[OFPU] freshwater metagenome; Freshwater Lake
198
276
+
Ile
GAT
[ENA]
¢þ
>WENV181367137
OFPU01001301
[OFPU] freshwater metagenome; Freshwater Lake
203
273
+
Cys
GCA
[ENA]
¢þ
>WENV181367136
OFPU01001088
[OFPU] freshwater metagenome; Freshwater Lake
289
362
+
Ala
TGC
[ENA]
¢þ
>WENV181367133
OFPU01000975
[OFPU] freshwater metagenome; Freshwater Lake
301
377
+
fMet
CAT
[ENA]
¢þ
>WENV181367138
OFPU01001301
[OFPU] freshwater metagenome; Freshwater Lake
341
427
+
Leu
TAA
[ENA]
¢þ
>WENV181367134
OFPU01001031
[OFPU] freshwater metagenome; Freshwater Lake
422
509
+
Ser
GGA
[ENA]
¢þ
>WENV181367127
OFPU01000496
[OFPU] freshwater metagenome; Freshwater Lake
476
550
+
Met
CAT
[ENA]
¢þ
>WENV181367132
OFPU01000844
[OFPU] freshwater metagenome; Freshwater Lake
542
461
-
Ser
GCT
[ENA]
¢þ
>WENV181367129
OFPU01000592
[OFPU] freshwater metagenome; Freshwater Lake
597
673
+
Ile
GAT
[ENA]
¢þ
>WENV181367130
OFPU01000592
[OFPU] freshwater metagenome; Freshwater Lake
683
758
+
Ala
TGC
[ENA]
¢þ
>WENV181367125
OFPU01000396
[OFPU] freshwater metagenome; Freshwater Lake
795
721
-
Arg
TCT
[ENA]
¢þ
>WENV181367124
OFPU01000249
[OFPU] freshwater metagenome; Freshwater Lake
824
754
-
Gly
TCC
[ENA]
¢þ
>WENV181367122
OFPU01000198
[OFPU] freshwater metagenome; Freshwater Lake
909
822
-
Ser
TGA
[ENA]
¢þ
>WENV181367123
OFPU01000228
[OFPU] freshwater metagenome; Freshwater Lake
945
1018
+
Gln
TTG
[ENA]
¢þ
>WENV181367120
OFPU01000190
[OFPU] freshwater metagenome; Freshwater Lake
1203
1286
+
Leu
CAA
[ENA]
¢þ
>WENV181367119
OFPU01000128
[OFPU] freshwater metagenome; Freshwater Lake
1393
1322
-
His
GTG
[ENA]
¢þ
>WENV181367121
OFPU01000198
[OFPU] freshwater metagenome; Freshwater Lake
1524
1451
-
fMet
CAT
[ENA]
¢þ
>WENV181367117
OFPU01000128
[OFPU] freshwater metagenome; Freshwater Lake
1696
1766
+
Gly
CCC
[ENA]
¢þ
>WENV181367118
OFPU01000128
[OFPU] freshwater metagenome; Freshwater Lake
2023
2094
+
Trp
CCA
[ENA]
¢þ
>WENV181367116
OFPU01000072
[OFPU] freshwater metagenome; Freshwater Lake
2468
2539
+
Pro
AGG
[ENA]
¢þ
>WENV181367115
OFPU01000048
[OFPU] freshwater metagenome; Freshwater Lake
3588
3517
-
Asp
GTC
[ENA]
¢þ
>WENV181367113
OFPU01000033
[OFPU] freshwater metagenome; Freshwater Lake
3697
3625
-
Ala
TGC
[ENA]
¢þ
>WENV181367112
OFPU01000033
[OFPU] freshwater metagenome; Freshwater Lake
3773
3700
-
Ile
GAT
[ENA]
¢þ
>WENV181367114
OFPU01000048
[OFPU] freshwater metagenome; Freshwater Lake
3832
3904
+
Glu
CTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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