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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFPW] freshwater metagenome; Freshwater Lake
HIT:
98 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181367237
OFPW01005981
[OFPW] freshwater metagenome; Freshwater Lake
38
112
+
Gln
TTG
[ENA]
¢þ
>WENV181367220
OFPW01003819
[OFPW] freshwater metagenome; Freshwater Lake
39
112
+
Arg
CCT
[ENA]
¢þ
>WENV181367235
OFPW01005807
[OFPW] freshwater metagenome; Freshwater Lake
42
125
+
Leu
TAG
[ENA]
¢þ
>WENV181367180
OFPW01000747
[OFPW] freshwater metagenome; Freshwater Lake
67
143
+
Pro
TGG
[ENA]
¢þ
>WENV181367211
OFPW01002671
[OFPW] freshwater metagenome; Freshwater Lake
72
148
+
Pro
TGG
[ENA]
¢þ
>WENV181367254
OFPW01010226
[OFPW] freshwater metagenome; Freshwater Lake
74
1
-
Ala
TGC
[ENA]
¢þ
>WENV181367232
OFPW01005540
[OFPW] freshwater metagenome; Freshwater Lake
95
20
-
Val
GAC
[ENA]
¢þ
>WENV181367159
OFPW01000051
[OFPW] freshwater metagenome; Freshwater Lake
109
194
+
Ser
TGA
[ENA]
¢þ
>WENV181367238
OFPW01007294
[OFPW] freshwater metagenome; Freshwater Lake
117
192
+
Thr
GGT
[ENA]
¢þ
>WENV181367236
OFPW01005898
[OFPW] freshwater metagenome; Freshwater Lake
119
36
-
Leu
CAA
[ENA]
¢þ
>WENV181367231
OFPW01005269
[OFPW] freshwater metagenome; Freshwater Lake
140
214
+
Gln
TTG
[ENA]
¢þ
>WENV181367173
OFPW01000442
[OFPW] freshwater metagenome; Freshwater Lake
151
224
+
Trp
CCA
[ENA]
¢þ
>WENV181367253
OFPW01010226
[OFPW] freshwater metagenome; Freshwater Lake
159
83
-
Ile
GAT
[ENA]
¢þ
>WENV181367239
OFPW01007355
[OFPW] freshwater metagenome; Freshwater Lake
166
92
-
Gly
GCC
[ENA]
¢þ
>WENV181367233
OFPW01005631
[OFPW] freshwater metagenome; Freshwater Lake
167
241
+
Val
GAC
[ENA]
¢þ
>WENV181367228
OFPW01004618
[OFPW] freshwater metagenome; Freshwater Lake
168
93
-
Lys
TTT
[ENA]
¢þ
>WENV181367161
OFPW01000076
[OFPW] freshwater metagenome; Freshwater Lake
173
100
-
Ala
TGC
[ENA]
¢þ
>WENV181367242
OFPW01007664
[OFPW] freshwater metagenome; Freshwater Lake
178
260
+
Leu
TAG
[ENA]
¢þ
>WENV181367250
OFPW01010130
[OFPW] freshwater metagenome; Freshwater Lake
186
259
+
Ala
GGC
[ENA]
¢þ
>WENV181367209
OFPW01002266
[OFPW] freshwater metagenome; Freshwater Lake
187
112
-
Arg
ACG
[ENA]
¢þ
>WENV181367203
OFPW01002008
[OFPW] freshwater metagenome; Freshwater Lake
196
281
+
Tyr
GTA
[ENA]
¢þ
>WENV181367219
OFPW01003684
[OFPW] freshwater metagenome; Freshwater Lake
205
132
-
Cys
GCA
[ENA]
¢þ
>WENV181367179
OFPW01000742
[OFPW] freshwater metagenome; Freshwater Lake
219
129
-
Ser
GCT
[ENA]
¢þ
>WENV181367184
OFPW01001163
[OFPW] freshwater metagenome; Freshwater Lake
220
293
+
Gly
GCC
[ENA]
¢þ
>WENV181367251
OFPW01010176
[OFPW] freshwater metagenome; Freshwater Lake
222
296
+
Ile
GAT
[ENA]
¢þ
>WENV181367218
OFPW01003464
[OFPW] freshwater metagenome; Freshwater Lake
225
150
-
fMet
CAT
[ENA]
¢þ
>WENV181367249
OFPW01009978
[OFPW] freshwater metagenome; Freshwater Lake
225
151
-
Thr
TGT
[ENA]
¢þ
>WENV181367243
OFPW01007944
[OFPW] freshwater metagenome; Freshwater Lake
225
297
+
Arg
CCG
[ENA]
¢þ
>WENV181367224
OFPW01004007
[OFPW] freshwater metagenome; Freshwater Lake
229
153
-
Met
CAT
[ENA]
¢þ
>WENV181367196
OFPW01001412
[OFPW] freshwater metagenome; Freshwater Lake
235
319
+
Leu
TAA
[ENA]
¢þ
>WENV181367248
OFPW01009955
[OFPW] freshwater metagenome; Freshwater Lake
237
312
+
Asn
GTT
[ENA]
¢þ
>WENV181367189
OFPW01001191
[OFPW] freshwater metagenome; Freshwater Lake
238
165
-
Lys
TTT
[ENA]
¢þ
>WENV181367244
OFPW01008049
[OFPW] freshwater metagenome; Freshwater Lake
239
166
-
Asn
GTT
[ENA]
¢þ
>WENV181367178
OFPW01000662
[OFPW] freshwater metagenome; Freshwater Lake
242
169
-
Gly
TCC
[ENA]
¢þ
>WENV181367216
OFPW01003062
[OFPW] freshwater metagenome; Freshwater Lake
252
328
+
fMet
CAT
[ENA]
¢þ
>WENV181367221
OFPW01003822
[OFPW] freshwater metagenome; Freshwater Lake
255
330
+
Thr
TGT
[ENA]
¢þ
>WENV181367215
OFPW01003029
[OFPW] freshwater metagenome; Freshwater Lake
258
182
-
His
GTG
[ENA]
¢þ
>WENV181367160
OFPW01000076
[OFPW] freshwater metagenome; Freshwater Lake
261
185
-
Ile
GAT
[ENA]
¢þ
>WENV181367162
OFPW01000118
[OFPW] freshwater metagenome; Freshwater Lake
272
346
+
Met
CAT
[ENA]
¢þ
>WENV181367192
OFPW01001236
[OFPW] freshwater metagenome; Freshwater Lake
273
193
-
Leu
GAG
[ENA]
¢þ
>WENV181367214
OFPW01002999
[OFPW] freshwater metagenome; Freshwater Lake
282
377
+
SeC
TCA
[ENA]
¢þ
>WENV181367241
OFPW01007485
[OFPW] freshwater metagenome; Freshwater Lake
286
359
+
Gly
TCC
[ENA]
¢þ
>WENV181367247
OFPW01009482
[OFPW] freshwater metagenome; Freshwater Lake
293
205
-
Ser
GGA
[ENA]
¢þ
>WENV181367199
OFPW01001646
[OFPW] freshwater metagenome; Freshwater Lake
301
374
+
Asn
GTT
[ENA]
¢þ
>WENV181367246
OFPW01008776
[OFPW] freshwater metagenome; Freshwater Lake
302
228
-
Arg
TCT
[ENA]
¢þ
>WENV181367222
OFPW01003862
[OFPW] freshwater metagenome; Freshwater Lake
304
230
-
Thr
TGT
[ENA]
¢þ
>WENV181367245
OFPW01008111
[OFPW] freshwater metagenome; Freshwater Lake
310
385
+
Val
TAC
[ENA]
¢þ
>WENV181367252
OFPW01010176
[OFPW] freshwater metagenome; Freshwater Lake
312
386
+
Ala
TGC
[ENA]
¢þ
>WENV181367227
OFPW01004618
[OFPW] freshwater metagenome; Freshwater Lake
313
238
-
Lys
CTT
[ENA]
¢þ
>WENV181367226
OFPW01004211
[OFPW] freshwater metagenome; Freshwater Lake
318
402
+
Leu
TAG
[ENA]
¢þ
>WENV181367194
OFPW01001345
[OFPW] freshwater metagenome; Freshwater Lake
321
246
-
Gly
GCC
[ENA]
¢þ
>WENV181367167
OFPW01000210
[OFPW] freshwater metagenome; Freshwater Lake
321
248
-
Leu
CAA
[ENA]
¢þ
>WENV181367223
OFPW01004007
[OFPW] freshwater metagenome; Freshwater Lake
324
251
-
Thr
GGT
[ENA]
¢þ
>WENV181367185
OFPW01001163
[OFPW] freshwater metagenome; Freshwater Lake
326
399
+
Cys
GCA
[ENA]
¢þ
>WENV181367186
OFPW01001191
[OFPW] freshwater metagenome; Freshwater Lake
337
412
+
Glu
TTC
[ENA]
¢þ
>WENV181367240
OFPW01007399
[OFPW] freshwater metagenome; Freshwater Lake
345
419
+
Pro
GGG
[ENA]
¢þ
>WENV181367204
OFPW01002008
[OFPW] freshwater metagenome; Freshwater Lake
353
426
+
Gly
TCC
[ENA]
¢þ
>WENV181367230
OFPW01004915
[OFPW] freshwater metagenome; Freshwater Lake
363
290
-
Leu
CAA
[ENA]
¢þ
>WENV181367183
OFPW01001159
[OFPW] freshwater metagenome; Freshwater Lake
371
444
+
Gly
CCC
[ENA]
¢þ
>WENV181367234
OFPW01005718
[OFPW] freshwater metagenome; Freshwater Lake
382
456
+
Asp
GTC
[ENA]
¢þ
>WENV181367202
OFPW01001980
[OFPW] freshwater metagenome; Freshwater Lake
389
315
-
Thr
GGT
[ENA]
¢þ
>WENV181367177
OFPW01000662
[OFPW] freshwater metagenome; Freshwater Lake
393
308
-
Tyr
GTA
[ENA]
¢þ
>WENV181367225
OFPW01004033
[OFPW] freshwater metagenome; Freshwater Lake
397
473
+
His
GTG
[ENA]
¢þ
>WENV181367193
OFPW01001345
[OFPW] freshwater metagenome; Freshwater Lake
417
344
-
Cys
GCA
[ENA]
¢þ
>WENV181367205
OFPW01002008
[OFPW] freshwater metagenome; Freshwater Lake
447
521
+
Thr
GGT
[ENA]
¢þ
>WENV181367187
OFPW01001191
[OFPW] freshwater metagenome; Freshwater Lake
451
525
+
Asp
GTC
[ENA]
¢þ
>WENV181367200
OFPW01001863
[OFPW] freshwater metagenome; Freshwater Lake
461
547
+
Leu
GAG
[ENA]
¢þ
>WENV181367229
OFPW01004635
[OFPW] freshwater metagenome; Freshwater Lake
466
540
+
Arg
TCG
[ENA]
¢þ
>WENV181367197
OFPW01001447
[OFPW] freshwater metagenome; Freshwater Lake
484
559
+
Ala
GGC
[ENA]
¢þ
>WENV181367208
OFPW01002160
[OFPW] freshwater metagenome; Freshwater Lake
492
567
+
His
GTG
[ENA]
¢þ
>WENV181367166
OFPW01000196
[OFPW] freshwater metagenome; Freshwater Lake
497
424
-
Glu
CTC
[ENA]
¢þ
>WENV181367175
OFPW01000498
[OFPW] freshwater metagenome; Freshwater Lake
500
575
+
Thr
TGT
[ENA]
¢þ
>WENV181367206
OFPW01002008
[OFPW] freshwater metagenome; Freshwater Lake
531
606
+
Asn
GTT
[ENA]
¢þ
>WENV181367182
OFPW01001052
[OFPW] freshwater metagenome; Freshwater Lake
535
461
-
Arg
TCT
[ENA]
¢þ
>WENV181367217
OFPW01003155
[OFPW] freshwater metagenome; Freshwater Lake
539
612
+
Ala
GGC
[ENA]
¢þ
>WENV181367201
OFPW01001957
[OFPW] freshwater metagenome; Freshwater Lake
542
469
-
Gly
TCC
[ENA]
¢þ
>WENV181367213
OFPW01002833
[OFPW] freshwater metagenome; Freshwater Lake
547
632
+
Ser
GGA
[ENA]
¢þ
>WENV181367188
OFPW01001191
[OFPW] freshwater metagenome; Freshwater Lake
565
641
+
Phe
GAA
[ENA]
¢þ
>WENV181367169
OFPW01000373
[OFPW] freshwater metagenome; Freshwater Lake
572
499
-
Arg
CCT
[ENA]
¢þ
>WENV181367212
OFPW01002724
[OFPW] freshwater metagenome; Freshwater Lake
579
654
+
Val
TAC
[ENA]
¢þ
>WENV181367210
OFPW01002573
[OFPW] freshwater metagenome; Freshwater Lake
584
508
-
Arg
ACG
[ENA]
¢þ
>WENV181367165
OFPW01000196
[OFPW] freshwater metagenome; Freshwater Lake
593
521
-
Gln
CTG
[ENA]
¢þ
>WENV181367168
OFPW01000284
[OFPW] freshwater metagenome; Freshwater Lake
596
669
+
Leu
TAA
[ENA]
¢þ
>WENV181367174
OFPW01000485
[OFPW] freshwater metagenome; Freshwater Lake
606
517
-
Ser
GCT
[ENA]
¢þ
>WENV181367198
OFPW01001531
[OFPW] freshwater metagenome; Freshwater Lake
615
688
+
Arg
ACG
[ENA]
¢þ
>WENV181367195
OFPW01001408
[OFPW] freshwater metagenome; Freshwater Lake
616
531
-
Leu
CAA
[ENA]
¢þ
>WENV181367181
OFPW01000786
[OFPW] freshwater metagenome; Freshwater Lake
621
545
-
Arg
CCT
[ENA]
¢þ
>WENV181367207
OFPW01002008
[OFPW] freshwater metagenome; Freshwater Lake
625
700
+
Gly
GCC
[ENA]
¢þ
>WENV181367191
OFPW01001210
[OFPW] freshwater metagenome; Freshwater Lake
634
560
-
Thr
GGT
[ENA]
¢þ
>WENV181367163
OFPW01000170
[OFPW] freshwater metagenome; Freshwater Lake
669
745
+
Ile
GAT
[ENA]
¢þ
>WENV181367190
OFPW01001199
[OFPW] freshwater metagenome; Freshwater Lake
735
809
+
Ile2
CAT
[ENA]
¢þ
>WENV181367164
OFPW01000170
[OFPW] freshwater metagenome; Freshwater Lake
773
848
+
Ala
TGC
[ENA]
¢þ
>WENV181367172
OFPW01000438
[OFPW] freshwater metagenome; Freshwater Lake
812
739
-
Gln
CTG
[ENA]
¢þ
>WENV181367170
OFPW01000414
[OFPW] freshwater metagenome; Freshwater Lake
870
798
-
Arg
CCT
[ENA]
¢þ
>WENV181367176
OFPW01000528
[OFPW] freshwater metagenome; Freshwater Lake
902
976
+
Asn
GTT
[ENA]
¢þ
>WENV181367171
OFPW01000438
[OFPW] freshwater metagenome; Freshwater Lake
991
918
-
Gln
TTG
[ENA]
¢þ
>WENV181367158
OFPW01000007
[OFPW] freshwater metagenome; Freshwater Lake
4241
4164
-
Ala
TGC
[ENA]
¢þ
>WENV181367157
OFPW01000007
[OFPW] freshwater metagenome; Freshwater Lake
4403
4329
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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