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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA gene List
[OFQG] freshwater metagenome; Freshwater Lake
HIT:
51 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181368061
OFQG01001444
[OFQG] freshwater metagenome; Freshwater Lake
39
115
+
Pro
CGG
[ENA]
¢þ
>WENV181368079
OFQG01003719
[OFQG] freshwater metagenome; Freshwater Lake
40
116
+
Ile2
CAT
[ENA]
¢þ
>WENV181368050
OFQG01000497
[OFQG] freshwater metagenome; Freshwater Lake
70
155
+
Leu
TAA
[ENA]
¢þ
>WENV181368041
OFQG01000093
[OFQG] freshwater metagenome; Freshwater Lake
72
147
+
Arg
CCG
[ENA]
¢þ
>WENV181368073
OFQG01003331
[OFQG] freshwater metagenome; Freshwater Lake
76
152
+
Arg
TCT
[ENA]
¢þ
>WENV181368068
OFQG01002689
[OFQG] freshwater metagenome; Freshwater Lake
105
194
+
Ser
CGA
[ENA]
¢þ
>WENV181368063
OFQG01001779
[OFQG] freshwater metagenome; Freshwater Lake
108
196
+
Leu
TAA
[ENA]
¢þ
>WENV181368076
OFQG01003493
[OFQG] freshwater metagenome; Freshwater Lake
114
41
-
Glu
CTC
[ENA]
¢þ
>WENV181368040
OFQG01000061
[OFQG] freshwater metagenome; Freshwater Lake
129
204
+
Lys
TTT
[ENA]
¢þ
>WENV181368049
OFQG01000435
[OFQG] freshwater metagenome; Freshwater Lake
139
211
+
Thr
GGT
[ENA]
¢þ
>WENV181368065
OFQG01002278
[OFQG] freshwater metagenome; Freshwater Lake
144
59
-
Leu
CAA
[ENA]
¢þ
>WENV181368047
OFQG01000347
[OFQG] freshwater metagenome; Freshwater Lake
150
77
-
Cys
GCA
[ENA]
¢þ
>WENV181368077
OFQG01003517
[OFQG] freshwater metagenome; Freshwater Lake
157
82
-
Phe
GAA
[ENA]
¢þ
>WENV181368062
OFQG01001449
[OFQG] freshwater metagenome; Freshwater Lake
205
130
-
Trp
CCA
[ENA]
¢þ
>WENV181368051
OFQG01000539
[OFQG] freshwater metagenome; Freshwater Lake
205
280
+
His
GTG
[ENA]
¢þ
>WENV181368058
OFQG01001171
[OFQG] freshwater metagenome; Freshwater Lake
207
282
+
Ala
TGC
[ENA]
¢þ
>WENV181368075
OFQG01003493
[OFQG] freshwater metagenome; Freshwater Lake
215
143
-
His
GTG
[ENA]
¢þ
>WENV181368072
OFQG01003115
[OFQG] freshwater metagenome; Freshwater Lake
217
142
-
Asn
GTT
[ENA]
¢þ
>WENV181368070
OFQG01002958
[OFQG] freshwater metagenome; Freshwater Lake
233
307
+
Glu
TTC
[ENA]
¢þ
>WENV181368069
OFQG01002814
[OFQG] freshwater metagenome; Freshwater Lake
297
384
+
Ser
GGA
[ENA]
¢þ
>WENV181368046
OFQG01000347
[OFQG] freshwater metagenome; Freshwater Lake
315
240
-
Gly
GCC
[ENA]
¢þ
>WENV181368052
OFQG01000581
[OFQG] freshwater metagenome; Freshwater Lake
335
261
-
Val
CAC
[ENA]
¢þ
>WENV181368071
OFQG01002958
[OFQG] freshwater metagenome; Freshwater Lake
336
410
+
Asp
GTC
[ENA]
¢þ
>WENV181368074
OFQG01003478
[OFQG] freshwater metagenome; Freshwater Lake
343
418
+
His
GTG
[ENA]
¢þ
>WENV181368067
OFQG01002531
[OFQG] freshwater metagenome; Freshwater Lake
368
292
-
Met
CAT
[ENA]
¢þ
>WENV181368064
OFQG01002120
[OFQG] freshwater metagenome; Freshwater Lake
383
307
-
Met
CAT
[ENA]
¢þ
>WENV181368078
OFQG01003544
[OFQG] freshwater metagenome; Freshwater Lake
463
376
-
Ser
TGA
[ENA]
¢þ
>WENV181368045
OFQG01000347
[OFQG] freshwater metagenome; Freshwater Lake
490
415
-
Phe
GAA
[ENA]
¢þ
>WENV181368066
OFQG01002455
[OFQG] freshwater metagenome; Freshwater Lake
565
492
-
Gly
CCC
[ENA]
¢þ
>WENV181368060
OFQG01001319
[OFQG] freshwater metagenome; Freshwater Lake
622
536
-
Leu
TAG
[ENA]
¢þ
>WENV181368055
OFQG01000985
[OFQG] freshwater metagenome; Freshwater Lake
637
564
-
Gly
TCC
[ENA]
¢þ
>WENV181368044
OFQG01000271
[OFQG] freshwater metagenome; Freshwater Lake
646
571
-
Val
TAC
[ENA]
¢þ
>WENV181368054
OFQG01000985
[OFQG] freshwater metagenome; Freshwater Lake
787
703
-
Tyr
GTA
[ENA]
¢þ
>WENV181368059
OFQG01001188
[OFQG] freshwater metagenome; Freshwater Lake
787
876
+
Ser
GGA
[ENA]
¢þ
>WENV181368056
OFQG01001016
[OFQG] freshwater metagenome; Freshwater Lake
902
827
-
Trp
CCA
[ENA]
¢þ
>WENV181368036
OFQG01000006
[OFQG] freshwater metagenome; Freshwater Lake
917
1001
+
Leu
GAG
[ENA]
¢þ
>WENV181368057
OFQG01001069
[OFQG] freshwater metagenome; Freshwater Lake
954
880
-
Met
CAT
[ENA]
¢þ
>WENV181368053
OFQG01000769
[OFQG] freshwater metagenome; Freshwater Lake
1073
1148
+
Asn
GTT
[ENA]
¢þ
>WENV181368043
OFQG01000233
[OFQG] freshwater metagenome; Freshwater Lake
1270
1357
+
Ser
TGA
[ENA]
¢þ
>WENV181368039
OFQG01000058
[OFQG] freshwater metagenome; Freshwater Lake
1298
1374
+
Arg
ACG
[ENA]
¢þ
>WENV181368048
OFQG01000379
[OFQG] freshwater metagenome; Freshwater Lake
1486
1562
+
Pro
TGG
[ENA]
¢þ
>WENV181368042
OFQG01000095
[OFQG] freshwater metagenome; Freshwater Lake
1524
1449
-
Thr
TGT
[ENA]
¢þ
>WENV181368029
OFQG01000001
[OFQG] freshwater metagenome; Freshwater Lake
1584
1669
+
Tyr
GTA
[ENA]
¢þ
>WENV181368030
OFQG01000001
[OFQG] freshwater metagenome; Freshwater Lake
1746
1819
+
Gly
TCC
[ENA]
¢þ
>WENV181368038
OFQG01000050
[OFQG] freshwater metagenome; Freshwater Lake
2438
2362
-
Gln
TTG
[ENA]
¢þ
>WENV181368037
OFQG01000031
[OFQG] freshwater metagenome; Freshwater Lake
2884
2792
-
Ser
GCT
[ENA]
¢þ
>WENV181368031
OFQG01000002
[OFQG] freshwater metagenome; Freshwater Lake
3111
3187
+
Ile
GAT
[ENA]
¢þ
>WENV181368032
OFQG01000002
[OFQG] freshwater metagenome; Freshwater Lake
3234
3309
+
Ala
TGC
[ENA]
¢þ
>WENV181368034
OFQG01000003
[OFQG] freshwater metagenome; Freshwater Lake
3463
3389
-
Ala
TGC
[ENA]
¢þ
>WENV181368033
OFQG01000003
[OFQG] freshwater metagenome; Freshwater Lake
3625
3551
-
Ile
GAT
[ENA]
¢þ
>WENV181368035
OFQG01000004
[OFQG] freshwater metagenome; Freshwater Lake
4074
4150
+
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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