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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA gene List
[OFQH] freshwater metagenome; Freshwater Lake
HIT:
9 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181368083
OFQH01000048
[OFQH] freshwater metagenome; Freshwater Lake
141
66
-
Glu
TTC
[ENA]
¢þ
>WENV181368088
OFQH01000660
[OFQH] freshwater metagenome; Freshwater Lake
143
54
-
Ser
GGA
[ENA]
¢þ
>WENV181368086
OFQH01000361
[OFQH] freshwater metagenome; Freshwater Lake
296
372
+
Ile
GAT
[ENA]
¢þ
>WENV181368082
OFQH01000048
[OFQH] freshwater metagenome; Freshwater Lake
310
234
-
Ile
GAT
[ENA]
¢þ
>WENV181368087
OFQH01000361
[OFQH] freshwater metagenome; Freshwater Lake
386
459
+
Ala
TGC
[ENA]
¢þ
>WENV181368085
OFQH01000180
[OFQH] freshwater metagenome; Freshwater Lake
420
349
-
Pro
AGG
[ENA]
¢þ
>WENV181368084
OFQH01000130
[OFQH] freshwater metagenome; Freshwater Lake
680
751
+
His
GTG
[ENA]
¢þ
>WENV181368081
OFQH01000011
[OFQH] freshwater metagenome; Freshwater Lake
3140
3065
-
Ala
TGC
[ENA]
¢þ
>WENV181368080
OFQH01000011
[OFQH] freshwater metagenome; Freshwater Lake
3226
3150
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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