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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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tRNA gene List
[OGDI] metagenome; Human gut stool
HIT:
108 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181438302
OGDI01003375
[OGDI] metagenome; Human gut stool
2
76
+
Ala
CGC
[ENA]
¢þ
>WENV181438290
OGDI01002349
[OGDI] metagenome; Human gut stool
24
96
+
Arg
CCT
[ENA]
¢þ
>WENV181438285
OGDI01001458
[OGDI] metagenome; Human gut stool
51
126
+
Lys
CTT
[ENA]
¢þ
>WENV181438305
OGDI01003704
[OGDI] metagenome; Human gut stool
60
136
+
Arg
ACG
[ENA]
¢þ
>WENV181438281
OGDI01001068
[OGDI] metagenome; Human gut stool
66
138
+
Thr
GGT
[ENA]
¢þ
>WENV181438310
OGDI01004463
[OGDI] metagenome; Human gut stool
128
201
+
Arg
CCT
[ENA]
¢þ
>WENV181438306
OGDI01003870
[OGDI] metagenome; Human gut stool
152
228
+
Ile2
CAT
[ENA]
¢þ
>WENV181438319
OGDI01006200
[OGDI] metagenome; Human gut stool
156
84
-
Thr
TGT
[ENA]
¢þ
>WENV181438261
OGDI01000487
[OGDI] metagenome; Human gut stool
181
255
+
Ile
GAT
[ENA]
¢þ
>WENV181438311
OGDI01004486
[OGDI] metagenome; Human gut stool
187
259
+
Gly
GCC
[ENA]
¢þ
>WENV181438308
OGDI01004066
[OGDI] metagenome; Human gut stool
194
276
+
Leu
CAG
[ENA]
¢þ
>WENV181438289
OGDI01002234
[OGDI] metagenome; Human gut stool
204
277
+
Gln
CTG
[ENA]
¢þ
>WENV181438284
OGDI01001422
[OGDI] metagenome; Human gut stool
267
191
-
Arg
TCT
[ENA]
¢þ
>WENV181438262
OGDI01000487
[OGDI] metagenome; Human gut stool
274
350
+
Ala
TGC
[ENA]
¢þ
>WENV181438312
OGDI01004653
[OGDI] metagenome; Human gut stool
281
366
+
Leu
AAG
[ENA]
¢þ
>WENV181438316
OGDI01006038
[OGDI] metagenome; Human gut stool
313
236
-
Arg
CCT
[ENA]
¢þ
>WENV181438318
OGDI01006200
[OGDI] metagenome; Human gut stool
328
256
-
Glu
TTC
[ENA]
¢þ
>WENV181438315
OGDI01005729
[OGDI] metagenome; Human gut stool
338
425
+
Ser
GCT
[ENA]
¢þ
>WENV181438270
OGDI01000682
[OGDI] metagenome; Human gut stool
351
425
+
Glu
CTC
[ENA]
¢þ
>WENV181438299
OGDI01002905
[OGDI] metagenome; Human gut stool
369
281
-
Ser
GCT
[ENA]
¢þ
>WENV181438297
OGDI01002585
[OGDI] metagenome; Human gut stool
369
284
-
Leu
TAA
[ENA]
¢þ
>WENV181438294
OGDI01002502
[OGDI] metagenome; Human gut stool
380
455
+
Gly
CCC
[ENA]
¢þ
>WENV181438321
OGDI01006451
[OGDI] metagenome; Human gut stool
393
319
-
Ala
TGC
[ENA]
¢þ
>WENV181438317
OGDI01006200
[OGDI] metagenome; Human gut stool
416
343
-
Asn
GTT
[ENA]
¢þ
>WENV181438313
OGDI01004928
[OGDI] metagenome; Human gut stool
450
377
-
Gln
CTG
[ENA]
¢þ
>WENV181438296
OGDI01002585
[OGDI] metagenome; Human gut stool
467
394
-
Val
TAC
[ENA]
¢þ
>WENV181438314
OGDI01005382
[OGDI] metagenome; Human gut stool
500
576
+
Met
CAT
[ENA]
¢þ
>WENV181438320
OGDI01006451
[OGDI] metagenome; Human gut stool
502
429
-
Ile
GAT
[ENA]
¢þ
>WENV181438280
OGDI01000943
[OGDI] metagenome; Human gut stool
522
450
-
Lys
TTT
[ENA]
¢þ
>WENV181438295
OGDI01002585
[OGDI] metagenome; Human gut stool
569
494
-
Asp
GTC
[ENA]
¢þ
>WENV181438304
OGDI01003475
[OGDI] metagenome; Human gut stool
581
667
+
Ser
TGA
[ENA]
¢þ
>WENV181438274
OGDI01000913
[OGDI] metagenome; Human gut stool
633
721
+
Ser
GGA
[ENA]
¢þ
>WENV181438279
OGDI01000943
[OGDI] metagenome; Human gut stool
639
566
-
Gln
TTG
[ENA]
¢þ
>WENV181438309
OGDI01004254
[OGDI] metagenome; Human gut stool
642
569
-
Lys
CTT
[ENA]
¢þ
>WENV181438288
OGDI01001827
[OGDI] metagenome; Human gut stool
651
577
-
Ala
GGC
[ENA]
¢þ
>WENV181438307
OGDI01003999
[OGDI] metagenome; Human gut stool
677
753
+
Ile
GAT
[ENA]
¢þ
>WENV181438278
OGDI01000943
[OGDI] metagenome; Human gut stool
723
649
-
His
GTG
[ENA]
¢þ
>WENV181438292
OGDI01002495
[OGDI] metagenome; Human gut stool
765
839
+
Ile
GAT
[ENA]
¢þ
>WENV181438303
OGDI01003430
[OGDI] metagenome; Human gut stool
777
706
-
Gln
TTG
[ENA]
¢þ
>WENV181438271
OGDI01000755
[OGDI] metagenome; Human gut stool
803
727
-
Arg
CCG
[ENA]
¢þ
>WENV181438300
OGDI01002942
[OGDI] metagenome; Human gut stool
808
882
+
Asn
GTT
[ENA]
¢þ
>WENV181438298
OGDI01002846
[OGDI] metagenome; Human gut stool
814
897
+
Leu
TAG
[ENA]
¢þ
>WENV181438252
OGDI01000108
[OGDI] metagenome; Human gut stool
832
744
-
Ser
GGA
[ENA]
¢þ
>WENV181438301
OGDI01003197
[OGDI] metagenome; Human gut stool
837
763
-
Ala
GGC
[ENA]
¢þ
>WENV181438293
OGDI01002495
[OGDI] metagenome; Human gut stool
894
967
+
Ala
TGC
[ENA]
¢þ
>WENV181438277
OGDI01000943
[OGDI] metagenome; Human gut stool
896
822
-
Arg
TCT
[ENA]
¢þ
>WENV181438276
OGDI01000943
[OGDI] metagenome; Human gut stool
971
901
-
Gly
TCC
[ENA]
¢þ
>WENV181438291
OGDI01002355
[OGDI] metagenome; Human gut stool
973
1046
+
fMet
CAT
[ENA]
¢þ
>WENV181438221
OGDI01000008
[OGDI] metagenome; Human gut stool
1022
1095
+
fMet
CAT
[ENA]
¢þ
>WENV181438287
OGDI01001519
[OGDI] metagenome; Human gut stool
1038
1111
+
fMet
CAT
[ENA]
¢þ
>WENV181438275
OGDI01000943
[OGDI] metagenome; Human gut stool
1079
1007
-
Phe
GAA
[ENA]
¢þ
>WENV181438283
OGDI01001247
[OGDI] metagenome; Human gut stool
1221
1146
-
Pro
GGG
[ENA]
¢þ
>WENV181438259
OGDI01000411
[OGDI] metagenome; Human gut stool
1338
1412
+
Ile
GAT
[ENA]
¢þ
>WENV181438260
OGDI01000411
[OGDI] metagenome; Human gut stool
1429
1503
+
Ala
TGC
[ENA]
¢þ
>WENV181438282
OGDI01001068
[OGDI] metagenome; Human gut stool
1431
1504
+
Trp
CCA
[ENA]
¢þ
>WENV181438286
OGDI01001483
[OGDI] metagenome; Human gut stool
1432
1358
-
Asp
GTC
[ENA]
¢þ
>WENV181438272
OGDI01000868
[OGDI] metagenome; Human gut stool
1454
1379
-
Gly
CCC
[ENA]
¢þ
>WENV181438238
OGDI01000024
[OGDI] metagenome; Human gut stool
1507
1434
-
Pro
CGG
[ENA]
¢þ
>WENV181438263
OGDI01000499
[OGDI] metagenome; Human gut stool
1561
1487
-
Thr
TGT
[ENA]
¢þ
>WENV181438237
OGDI01000024
[OGDI] metagenome; Human gut stool
1663
1736
+
Phe
GAA
[ENA]
¢þ
>WENV181438266
OGDI01000562
[OGDI] metagenome; Human gut stool
1824
1896
+
Arg
CCG
[ENA]
¢þ
>WENV181438273
OGDI01000897
[OGDI] metagenome; Human gut stool
2082
1999
-
Tyr
GTA
[ENA]
¢þ
>WENV181438268
OGDI01000574
[OGDI] metagenome; Human gut stool
2291
2364
+
Thr
CGT
[ENA]
¢þ
>WENV181438269
OGDI01000658
[OGDI] metagenome; Human gut stool
2308
2224
-
Leu
CAA
[ENA]
¢þ
>WENV181438265
OGDI01000542
[OGDI] metagenome; Human gut stool
2516
2442
-
Asn
GTT
[ENA]
¢þ
>WENV181438247
OGDI01000060
[OGDI] metagenome; Human gut stool
2558
2485
-
Lys
TTT
[ENA]
¢þ
>WENV181438257
OGDI01000306
[OGDI] metagenome; Human gut stool
2688
2616
-
Glu
TTC
[ENA]
¢þ
>WENV181438267
OGDI01000571
[OGDI] metagenome; Human gut stool
2811
2885
+
Ile2
CAT
[ENA]
¢þ
>WENV181438264
OGDI01000530
[OGDI] metagenome; Human gut stool
3048
3123
+
Lys
TTT
[ENA]
¢þ
>WENV181438245
OGDI01000056
[OGDI] metagenome; Human gut stool
3055
2970
-
Leu
TAA
[ENA]
¢þ
>WENV181438244
OGDI01000056
[OGDI] metagenome; Human gut stool
3144
3071
-
Gly
GCC
[ENA]
¢þ
>WENV181438251
OGDI01000106
[OGDI] metagenome; Human gut stool
4006
3930
-
Val
TAC
[ENA]
¢þ
>WENV181438258
OGDI01000366
[OGDI] metagenome; Human gut stool
4149
4223
+
Cys
GCA
[ENA]
¢þ
>WENV181438254
OGDI01000178
[OGDI] metagenome; Human gut stool
4707
4622
-
Ser
TGA
[ENA]
¢þ
>WENV181438256
OGDI01000245
[OGDI] metagenome; Human gut stool
5827
5754
-
Pro
CGG
[ENA]
¢þ
>WENV181438230
OGDI01000017
[OGDI] metagenome; Human gut stool
5921
5850
-
Gly
CCC
[ENA]
¢þ
>WENV181438229
OGDI01000017
[OGDI] metagenome; Human gut stool
6026
5953
-
Thr
CGT
[ENA]
¢þ
>WENV181438255
OGDI01000180
[OGDI] metagenome; Human gut stool
7410
7484
+
Glu
CTC
[ENA]
¢þ
>WENV181438250
OGDI01000100
[OGDI] metagenome; Human gut stool
7534
7446
-
Ser
GGA
[ENA]
¢þ
>WENV181438248
OGDI01000067
[OGDI] metagenome; Human gut stool
7816
7745
-
Gln
TTG
[ENA]
¢þ
>WENV181438253
OGDI01000155
[OGDI] metagenome; Human gut stool
8333
8415
+
Leu
TAG
[ENA]
¢þ
>WENV181438235
OGDI01000023
[OGDI] metagenome; Human gut stool
11388
11475
+
Ser
GCT
[ENA]
¢þ
>WENV181438236
OGDI01000023
[OGDI] metagenome; Human gut stool
11503
11575
+
Glu
CTC
[ENA]
¢þ
>WENV181438249
OGDI01000096
[OGDI] metagenome; Human gut stool
12277
12361
+
Leu
CAA
[ENA]
¢þ
>WENV181438241
OGDI01000040
[OGDI] metagenome; Human gut stool
12582
12500
-
Tyr
GTA
[ENA]
¢þ
>WENV181438243
OGDI01000051
[OGDI] metagenome; Human gut stool
15257
15180
-
Ile2
CAT
[ENA]
¢þ
>WENV181438246
OGDI01000058
[OGDI] metagenome; Human gut stool
15314
15242
-
Arg
CCT
[ENA]
¢þ
>WENV181438219
OGDI01000003
[OGDI] metagenome; Human gut stool
16456
16382
-
Met
CAT
[ENA]
¢þ
>WENV181438225
OGDI01000009
[OGDI] metagenome; Human gut stool
17804
17730
-
Thr
TGT
[ENA]
¢þ
>WENV181438242
OGDI01000042
[OGDI] metagenome; Human gut stool
18142
18213
+
Cys
GCA
[ENA]
¢þ
>WENV181438232
OGDI01000019
[OGDI] metagenome; Human gut stool
19323
19249
-
Asn
GTT
[ENA]
¢þ
>WENV181438240
OGDI01000030
[OGDI] metagenome; Human gut stool
22310
22236
-
Pro
TGG
[ENA]
¢þ
>WENV181438224
OGDI01000009
[OGDI] metagenome; Human gut stool
23398
23313
-
Ser
TGA
[ENA]
¢þ
>WENV181438223
OGDI01000009
[OGDI] metagenome; Human gut stool
27034
26961
-
Phe
GAA
[ENA]
¢þ
>WENV181438226
OGDI01000015
[OGDI] metagenome; Human gut stool
27940
27867
-
Lys
CTT
[ENA]
¢þ
>WENV181438239
OGDI01000029
[OGDI] metagenome; Human gut stool
31645
31574
-
Gln
CTG
[ENA]
¢þ
>WENV181438228
OGDI01000017
[OGDI] metagenome; Human gut stool
36784
36711
-
Lys
CTT
[ENA]
¢þ
>WENV181438234
OGDI01000022
[OGDI] metagenome; Human gut stool
38665
38590
-
Val
TAC
[ENA]
¢þ
>WENV181438227
OGDI01000017
[OGDI] metagenome; Human gut stool
43657
43731
+
Asp
GTC
[ENA]
¢þ
>WENV181438231
OGDI01000019
[OGDI] metagenome; Human gut stool
44253
44169
-
Leu
CAA
[ENA]
¢þ
>WENV181438233
OGDI01000020
[OGDI] metagenome; Human gut stool
57288
57363
+
Arg
TCT
[ENA]
¢þ
>WENV181438220
OGDI01000004
[OGDI] metagenome; Human gut stool
70376
70458
+
Leu
TAG
[ENA]
¢þ
>WENV181438214
OGDI01000002
[OGDI] metagenome; Human gut stool
81667
81738
+
Gln
TTG
[ENA]
¢þ
>WENV181438216
OGDI01000002
[OGDI] metagenome; Human gut stool
94267
94195
-
Arg
CCT
[ENA]
¢þ
>WENV181438222
OGDI01000009
[OGDI] metagenome; Human gut stool
94360
94285
-
His
GTG
[ENA]
¢þ
>WENV181438215
OGDI01000002
[OGDI] metagenome; Human gut stool
108718
108631
-
Leu
TAA
[ENA]
¢þ
>WENV181438218
OGDI01000003
[OGDI] metagenome; Human gut stool
137451
137378
-
Trp
CCA
[ENA]
¢þ
>WENV181438217
OGDI01000003
[OGDI] metagenome; Human gut stool
138851
138779
-
Thr
GGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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