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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OGFS] metagenome; Human gut stool
HIT:
56 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181489167
OGFS01001414
[OGFS] metagenome; Human gut stool
4
80
+
Val
CAC
[ENA]
¢þ
>WENV181489169
OGFS01002038
[OGFS] metagenome; Human gut stool
72
160
+
Leu
TAA
[ENA]
¢þ
>WENV181489151
OGFS01000493
[OGFS] metagenome; Human gut stool
117
29
-
Ser
GGA
[ENA]
¢þ
>WENV181489179
OGFS01003391
[OGFS] metagenome; Human gut stool
149
224
+
Ala
GGC
[ENA]
¢þ
>WENV181489146
OGFS01000399
[OGFS] metagenome; Human gut stool
150
76
-
Cys
GCA
[ENA]
¢þ
>WENV181489150
OGFS01000482
[OGFS] metagenome; Human gut stool
153
79
-
Asn
GTT
[ENA]
¢þ
>WENV181489177
OGFS01002907
[OGFS] metagenome; Human gut stool
166
241
+
Gly
GCC
[ENA]
¢þ
>WENV181489170
OGFS01002038
[OGFS] metagenome; Human gut stool
168
244
+
fMet
CAT
[ENA]
¢þ
>WENV181489171
OGFS01002038
[OGFS] metagenome; Human gut stool
262
337
+
Gly
TCC
[ENA]
¢þ
>WENV181489178
OGFS01002907
[OGFS] metagenome; Human gut stool
271
345
+
Cys
GCA
[ENA]
¢þ
>WENV181489168
OGFS01001854
[OGFS] metagenome; Human gut stool
273
186
-
Ser
GCT
[ENA]
¢þ
>WENV181489141
OGFS01000248
[OGFS] metagenome; Human gut stool
291
216
-
Lys
CTT
[ENA]
¢þ
>WENV181489164
OGFS01001325
[OGFS] metagenome; Human gut stool
329
405
+
Arg
CCG
[ENA]
¢þ
>WENV181489172
OGFS01002038
[OGFS] metagenome; Human gut stool
343
418
+
Lys
TTT
[ENA]
¢þ
>WENV181489132
OGFS01000128
[OGFS] metagenome; Human gut stool
352
279
-
Phe
GAA
[ENA]
¢þ
>WENV181489140
OGFS01000248
[OGFS] metagenome; Human gut stool
369
295
-
Glu
CTC
[ENA]
¢þ
>WENV181489173
OGFS01002038
[OGFS] metagenome; Human gut stool
424
500
+
Arg
TCT
[ENA]
¢þ
>WENV181489174
OGFS01002038
[OGFS] metagenome; Human gut stool
510
586
+
Ile2
CAT
[ENA]
¢þ
>WENV181489138
OGFS01000202
[OGFS] metagenome; Human gut stool
561
487
-
Arg
TCT
[ENA]
¢þ
>WENV181489175
OGFS01002038
[OGFS] metagenome; Human gut stool
589
663
+
Glu
TTC
[ENA]
¢þ
>WENV181489153
OGFS01000579
[OGFS] metagenome; Human gut stool
605
682
+
Val
TAC
[ENA]
¢þ
>WENV181489176
OGFS01002038
[OGFS] metagenome; Human gut stool
668
741
+
Ala
TGC
[ENA]
¢þ
>WENV181489161
OGFS01001125
[OGFS] metagenome; Human gut stool
802
876
+
Asp
GTC
[ENA]
¢þ
>WENV181489165
OGFS01001329
[OGFS] metagenome; Human gut stool
836
923
+
Ser
TGA
[ENA]
¢þ
>WENV181489166
OGFS01001329
[OGFS] metagenome; Human gut stool
956
1049
+
Ser
GCT
[ENA]
¢þ
>WENV181489162
OGFS01001144
[OGFS] metagenome; Human gut stool
1131
1204
+
Asn
GTT
[ENA]
¢þ
>WENV181489158
OGFS01000758
[OGFS] metagenome; Human gut stool
1234
1159
-
Lys
TTT
[ENA]
¢þ
>WENV181489163
OGFS01001144
[OGFS] metagenome; Human gut stool
1254
1325
+
Glu
TTC
[ENA]
¢þ
>WENV181489155
OGFS01000597
[OGFS] metagenome; Human gut stool
1300
1375
+
Pro
TGG
[ENA]
¢þ
>WENV181489148
OGFS01000432
[OGFS] metagenome; Human gut stool
1673
1589
-
Leu
TAA
[ENA]
¢þ
>WENV181489159
OGFS01000762
[OGFS] metagenome; Human gut stool
1697
1623
-
Ala
GGC
[ENA]
¢þ
>WENV181489160
OGFS01000801
[OGFS] metagenome; Human gut stool
1700
1626
-
Glu
CTC
[ENA]
¢þ
>WENV181489147
OGFS01000432
[OGFS] metagenome; Human gut stool
1762
1689
-
Gly
GCC
[ENA]
¢þ
>WENV181489145
OGFS01000393
[OGFS] metagenome; Human gut stool
1802
1875
+
Thr
CGT
[ENA]
¢þ
>WENV181489143
OGFS01000389
[OGFS] metagenome; Human gut stool
1841
1915
+
Ile
GAT
[ENA]
¢þ
>WENV181489144
OGFS01000389
[OGFS] metagenome; Human gut stool
1930
2004
+
Ala
TGC
[ENA]
¢þ
>WENV181489156
OGFS01000626
[OGFS] metagenome; Human gut stool
1992
1918
-
Thr
TGT
[ENA]
¢þ
>WENV181489131
OGFS01000114
[OGFS] metagenome; Human gut stool
2075
2004
-
Gln
TTG
[ENA]
¢þ
>WENV181489142
OGFS01000293
[OGFS] metagenome; Human gut stool
2225
2152
-
Lys
CTT
[ENA]
¢þ
>WENV181489134
OGFS01000157
[OGFS] metagenome; Human gut stool
2296
2222
-
His
GTG
[ENA]
¢þ
>WENV181489157
OGFS01000649
[OGFS] metagenome; Human gut stool
2325
2410
+
Ser
TGA
[ENA]
¢þ
>WENV181489154
OGFS01000582
[OGFS] metagenome; Human gut stool
2337
2409
+
Arg
CCG
[ENA]
¢þ
>WENV181489152
OGFS01000566
[OGFS] metagenome; Human gut stool
2468
2550
+
Leu
TAG
[ENA]
¢þ
>WENV181489133
OGFS01000155
[OGFS] metagenome; Human gut stool
3320
3391
+
Gln
CTG
[ENA]
¢þ
>WENV181489149
OGFS01000464
[OGFS] metagenome; Human gut stool
3410
3335
-
Pro
GGG
[ENA]
¢þ
>WENV181489126
OGFS01000014
[OGFS] metagenome; Human gut stool
5275
5201
-
Met
CAT
[ENA]
¢þ
>WENV181489139
OGFS01000244
[OGFS] metagenome; Human gut stool
5293
5367
+
Ile2
CAT
[ENA]
¢þ
>WENV181489137
OGFS01000201
[OGFS] metagenome; Human gut stool
6596
6669
+
fMet
CAT
[ENA]
¢þ
>WENV181489136
OGFS01000179
[OGFS] metagenome; Human gut stool
7093
7018
-
Phe
GAA
[ENA]
¢þ
>WENV181489135
OGFS01000179
[OGFS] metagenome; Human gut stool
7275
7348
+
Pro
CGG
[ENA]
¢þ
>WENV181489130
OGFS01000101
[OGFS] metagenome; Human gut stool
10289
10377
+
Ser
GGA
[ENA]
¢þ
>WENV181489125
OGFS01000005
[OGFS] metagenome; Human gut stool
10639
10711
+
Glu
TTC
[ENA]
¢þ
>WENV181489129
OGFS01000053
[OGFS] metagenome; Human gut stool
14395
14322
-
Trp
CCA
[ENA]
¢þ
>WENV181489128
OGFS01000053
[OGFS] metagenome; Human gut stool
15761
15689
-
Thr
GGT
[ENA]
¢þ
>WENV181489127
OGFS01000053
[OGFS] metagenome; Human gut stool
15933
15850
-
Tyr
GTA
[ENA]
¢þ
>WENV181489124
OGFS01000002
[OGFS] metagenome; Human gut stool
23917
23845
-
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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