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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OGGY] metagenome; Human gut stool
HIT:
41 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181516474
OGGY01001835
[OGGY] metagenome; Human gut stool
95
168
+
Thr
CGT
[ENA]
¢þ
>WENV181516439
OGGY01000018
[OGGY] metagenome; Human gut stool
97
180
+
Tyr
GTA
[ENA]
¢þ
>WENV181516473
OGGY01001041
[OGGY] metagenome; Human gut stool
151
68
-
Leu
CAG
[ENA]
¢þ
>WENV181516455
OGGY01000239
[OGGY] metagenome; Human gut stool
153
79
-
Asn
GTT
[ENA]
¢þ
>WENV181516475
OGGY01001990
[OGGY] metagenome; Human gut stool
191
267
+
Ile
GAT
[ENA]
¢þ
>WENV181516471
OGGY01000998
[OGGY] metagenome; Human gut stool
213
139
-
Glu
CTC
[ENA]
¢þ
>WENV181516477
OGGY01002675
[OGGY] metagenome; Human gut stool
226
299
+
Trp
CCA
[ENA]
¢þ
>WENV181516467
OGGY01000923
[OGGY] metagenome; Human gut stool
239
168
-
Gly
GCC
[ENA]
¢þ
>WENV181516478
OGGY01003473
[OGGY] metagenome; Human gut stool
267
193
-
Ala
GGC
[ENA]
¢þ
>WENV181516472
OGGY01001041
[OGGY] metagenome; Human gut stool
271
198
-
Gly
GCC
[ENA]
¢þ
>WENV181516440
OGGY01000018
[OGGY] metagenome; Human gut stool
273
345
+
Thr
GGT
[ENA]
¢þ
>WENV181516476
OGGY01001990
[OGGY] metagenome; Human gut stool
278
351
+
Ala
TGC
[ENA]
¢þ
>WENV181516468
OGGY01000966
[OGGY] metagenome; Human gut stool
282
194
-
Ser
GGA
[ENA]
¢þ
>WENV181516462
OGGY01000757
[OGGY] metagenome; Human gut stool
314
240
-
Ala
TGC
[ENA]
¢þ
>WENV181516466
OGGY01000923
[OGGY] metagenome; Human gut stool
341
266
-
Pro
TGG
[ENA]
¢þ
>WENV181516470
OGGY01000998
[OGGY] metagenome; Human gut stool
655
568
-
Ser
GCT
[ENA]
¢þ
>WENV181516465
OGGY01000857
[OGGY] metagenome; Human gut stool
919
993
+
Ala
GGC
[ENA]
¢þ
>WENV181516450
OGGY01000139
[OGGY] metagenome; Human gut stool
1122
1196
+
Thr
TGT
[ENA]
¢þ
>WENV181516469
OGGY01000987
[OGGY] metagenome; Human gut stool
1164
1237
+
Lys
CTT
[ENA]
¢þ
>WENV181516452
OGGY01000157
[OGGY] metagenome; Human gut stool
1388
1314
-
Arg
TCT
[ENA]
¢þ
>WENV181516464
OGGY01000855
[OGGY] metagenome; Human gut stool
1460
1385
-
His
GTG
[ENA]
¢þ
>WENV181516463
OGGY01000821
[OGGY] metagenome; Human gut stool
1465
1540
+
Phe
GAA
[ENA]
¢þ
>WENV181516460
OGGY01000410
[OGGY] metagenome; Human gut stool
1527
1599
+
Glu
TTC
[ENA]
¢þ
>WENV181516441
OGGY01000018
[OGGY] metagenome; Human gut stool
1638
1711
+
Trp
CCA
[ENA]
¢þ
>WENV181516454
OGGY01000223
[OGGY] metagenome; Human gut stool
1785
1859
+
Ile2
CAT
[ENA]
¢þ
>WENV181516461
OGGY01000718
[OGGY] metagenome; Human gut stool
2107
2034
-
Lys
TTT
[ENA]
¢þ
>WENV181516457
OGGY01000347
[OGGY] metagenome; Human gut stool
2677
2589
-
Ser
GGA
[ENA]
¢þ
>WENV181516459
OGGY01000366
[OGGY] metagenome; Human gut stool
3162
3247
+
Ser
TGA
[ENA]
¢þ
>WENV181516456
OGGY01000290
[OGGY] metagenome; Human gut stool
4199
4274
+
Gly
CCC
[ENA]
¢þ
>WENV181516458
OGGY01000349
[OGGY] metagenome; Human gut stool
4898
4982
+
Leu
CAA
[ENA]
¢þ
>WENV181516448
OGGY01000097
[OGGY] metagenome; Human gut stool
5135
5062
-
Trp
CCA
[ENA]
¢þ
>WENV181516449
OGGY01000124
[OGGY] metagenome; Human gut stool
5149
5223
+
Asp
GTC
[ENA]
¢þ
>WENV181516453
OGGY01000175
[OGGY] metagenome; Human gut stool
5295
5213
-
Leu
TAG
[ENA]
¢þ
>WENV181516451
OGGY01000153
[OGGY] metagenome; Human gut stool
5436
5360
-
Val
TAC
[ENA]
¢þ
>WENV181516447
OGGY01000068
[OGGY] metagenome; Human gut stool
6825
6751
-
Met
CAT
[ENA]
¢þ
>WENV181516443
OGGY01000041
[OGGY] metagenome; Human gut stool
7348
7273
-
Lys
TTT
[ENA]
¢þ
>WENV181516445
OGGY01000050
[OGGY] metagenome; Human gut stool
10448
10522
+
Ile
GAT
[ENA]
¢þ
>WENV181516446
OGGY01000050
[OGGY] metagenome; Human gut stool
10539
10613
+
Ala
TGC
[ENA]
¢þ
>WENV181516444
OGGY01000049
[OGGY] metagenome; Human gut stool
11318
11394
+
Lys
TTT
[ENA]
¢þ
>WENV181516442
OGGY01000034
[OGGY] metagenome; Human gut stool
15266
15195
-
Gln
TTG
[ENA]
¢þ
>WENV181516438
OGGY01000005
[OGGY] metagenome; Human gut stool
16726
16798
+
Arg
CCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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