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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OGKQ] metagenome; Human gut stool
HIT:
116 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181591530
OGKQ01000760
[OGKQ] metagenome; Human gut stool
2
76
+
Asp
GTC
[ENA]
¢þ
>WENV181591538
OGKQ01001440
[OGKQ] metagenome; Human gut stool
8
81
+
Lys
TTT
[ENA]
¢þ
>WENV181591572
OGKQ01003634
[OGKQ] metagenome; Human gut stool
11
85
+
Arg
CCT
[ENA]
¢þ
>WENV181591592
OGKQ01009538
[OGKQ] metagenome; Human gut stool
22
94
+
Thr
GGT
[ENA]
¢þ
>WENV181591532
OGKQ01000884
[OGKQ] metagenome; Human gut stool
25
97
+
Arg
CCT
[ENA]
¢þ
>WENV181591583
OGKQ01005719
[OGKQ] metagenome; Human gut stool
25
110
+
Leu
CAG
[ENA]
¢þ
>WENV181591569
OGKQ01003500
[OGKQ] metagenome; Human gut stool
28
101
+
Lys
TTT
[ENA]
¢þ
>WENV181591562
OGKQ01003328
[OGKQ] metagenome; Human gut stool
38
112
+
His
GTG
[ENA]
¢þ
>WENV181591565
OGKQ01003429
[OGKQ] metagenome; Human gut stool
39
111
+
Asn
GTT
[ENA]
¢þ
>WENV181591516
OGKQ01000269
[OGKQ] metagenome; Human gut stool
58
129
+
Gln
CTG
[ENA]
¢þ
>WENV181591527
OGKQ01000701
[OGKQ] metagenome; Human gut stool
59
135
+
Ile
GAT
[ENA]
¢þ
>WENV181591529
OGKQ01000717
[OGKQ] metagenome; Human gut stool
73
148
+
Pro
TGG
[ENA]
¢þ
>WENV181591590
OGKQ01008329
[OGKQ] metagenome; Human gut stool
75
-1
-
Met
CAT
[ENA]
¢þ
>WENV181591513
OGKQ01000202
[OGKQ] metagenome; Human gut stool
86
161
+
Val
TAC
[ENA]
¢þ
>WENV181591563
OGKQ01003328
[OGKQ] metagenome; Human gut stool
123
197
+
Gln
TTG
[ENA]
¢þ
>WENV181591552
OGKQ01002253
[OGKQ] metagenome; Human gut stool
127
53
-
Cys
GCA
[ENA]
¢þ
>WENV181591545
OGKQ01001795
[OGKQ] metagenome; Human gut stool
148
74
-
Thr
TGT
[ENA]
¢þ
>WENV181591589
OGKQ01008329
[OGKQ] metagenome; Human gut stool
162
88
-
Val
TAC
[ENA]
¢þ
>WENV181591566
OGKQ01003429
[OGKQ] metagenome; Human gut stool
166
238
+
Glu
TTC
[ENA]
¢þ
>WENV181591591
OGKQ01009299
[OGKQ] metagenome; Human gut stool
169
84
-
Leu
AAG
[ENA]
¢þ
>WENV181591543
OGKQ01001548
[OGKQ] metagenome; Human gut stool
187
114
-
Phe
GAA
[ENA]
¢þ
>WENV181591588
OGKQ01008226
[OGKQ] metagenome; Human gut stool
189
117
-
Gln
CTG
[ENA]
¢þ
>WENV181591522
OGKQ01000526
[OGKQ] metagenome; Human gut stool
192
118
-
Ile2
CAT
[ENA]
¢þ
>WENV181591575
OGKQ01004309
[OGKQ] metagenome; Human gut stool
210
298
+
Ser
GGA
[ENA]
¢þ
>WENV181591561
OGKQ01003314
[OGKQ] metagenome; Human gut stool
211
123
-
Ser
GCT
[ENA]
¢þ
>WENV181591510
OGKQ01000123
[OGKQ] metagenome; Human gut stool
218
144
-
Asn
GTT
[ENA]
¢þ
>WENV181591564
OGKQ01003328
[OGKQ] metagenome; Human gut stool
230
302
+
Lys
TTT
[ENA]
¢þ
>WENV181591525
OGKQ01000676
[OGKQ] metagenome; Human gut stool
243
169
-
Met
CAT
[ENA]
¢þ
>WENV181591559
OGKQ01003104
[OGKQ] metagenome; Human gut stool
254
327
+
Trp
CCA
[ENA]
¢þ
>WENV181591567
OGKQ01003429
[OGKQ] metagenome; Human gut stool
262
334
+
Thr
TGT
[ENA]
¢þ
>WENV181591573
OGKQ01003704
[OGKQ] metagenome; Human gut stool
266
340
+
Ala
TGC
[ENA]
¢þ
>WENV181591542
OGKQ01001548
[OGKQ] metagenome; Human gut stool
267
196
-
Gln
CTG
[ENA]
¢þ
>WENV181591584
OGKQ01006785
[OGKQ] metagenome; Human gut stool
312
385
+
Gln
CTG
[ENA]
¢þ
>WENV181591520
OGKQ01000452
[OGKQ] metagenome; Human gut stool
316
388
+
Arg
CCT
[ENA]
¢þ
>WENV181591578
OGKQ01005569
[OGKQ] metagenome; Human gut stool
326
401
+
Pro
TGG
[ENA]
¢þ
>WENV181591568
OGKQ01003429
[OGKQ] metagenome; Human gut stool
338
412
+
Ile2
CAT
[ENA]
¢þ
>WENV181591541
OGKQ01001548
[OGKQ] metagenome; Human gut stool
359
273
-
Ser
TGA
[ENA]
¢þ
>WENV181591587
OGKQ01008009
[OGKQ] metagenome; Human gut stool
401
327
-
Arg
CCG
[ENA]
¢þ
>WENV181591523
OGKQ01000567
[OGKQ] metagenome; Human gut stool
401
489
+
Ser
GGA
[ENA]
¢þ
>WENV181591579
OGKQ01005569
[OGKQ] metagenome; Human gut stool
407
478
+
Gly
TCC
[ENA]
¢þ
>WENV181591558
OGKQ01003101
[OGKQ] metagenome; Human gut stool
414
325
-
Ser
GCT
[ENA]
¢þ
>WENV181591576
OGKQ01004417
[OGKQ] metagenome; Human gut stool
422
351
-
Trp
CCA
[ENA]
¢þ
>WENV181591540
OGKQ01001548
[OGKQ] metagenome; Human gut stool
441
366
-
Arg
ACG
[ENA]
¢þ
>WENV181591593
OGKQ01009927
[OGKQ] metagenome; Human gut stool
499
424
-
Lys
TTT
[ENA]
¢þ
>WENV181591580
OGKQ01005569
[OGKQ] metagenome; Human gut stool
505
578
+
Arg
TCT
[ENA]
¢þ
>WENV181591539
OGKQ01001548
[OGKQ] metagenome; Human gut stool
532
447
-
Ser
GCT
[ENA]
¢þ
>WENV181591585
OGKQ01007045
[OGKQ] metagenome; Human gut stool
537
609
+
Arg
CCG
[ENA]
¢þ
>WENV181591586
OGKQ01007512
[OGKQ] metagenome; Human gut stool
544
460
-
Leu
CAA
[ENA]
¢þ
>WENV181591581
OGKQ01005569
[OGKQ] metagenome; Human gut stool
634
708
+
His
GTG
[ENA]
¢þ
>WENV181591551
OGKQ01002251
[OGKQ] metagenome; Human gut stool
664
591
-
Gly
CCC
[ENA]
¢þ
>WENV181591582
OGKQ01005586
[OGKQ] metagenome; Human gut stool
695
621
-
Ala
TGC
[ENA]
¢þ
>WENV181591512
OGKQ01000148
[OGKQ] metagenome; Human gut stool
697
613
-
Leu
CAA
[ENA]
¢þ
>WENV181591577
OGKQ01004696
[OGKQ] metagenome; Human gut stool
767
678
-
Ser
CGA
[ENA]
¢þ
>WENV181591544
OGKQ01001785
[OGKQ] metagenome; Human gut stool
784
859
+
Pro
CGG
[ENA]
¢þ
>WENV181591571
OGKQ01003606
[OGKQ] metagenome; Human gut stool
786
711
-
fMet
CAT
[ENA]
¢þ
>WENV181591515
OGKQ01000242
[OGKQ] metagenome; Human gut stool
810
735
-
His
GTG
[ENA]
¢þ
>WENV181591555
OGKQ01002527
[OGKQ] metagenome; Human gut stool
933
862
-
Cys
GCA
[ENA]
¢þ
>WENV181591574
OGKQ01004020
[OGKQ] metagenome; Human gut stool
948
874
-
Glu
CTC
[ENA]
¢þ
>WENV181591556
OGKQ01002531
[OGKQ] metagenome; Human gut stool
991
919
-
Arg
CCG
[ENA]
¢þ
>WENV181591549
OGKQ01002189
[OGKQ] metagenome; Human gut stool
1020
946
-
Ala
TGC
[ENA]
¢þ
>WENV181591554
OGKQ01002527
[OGKQ] metagenome; Human gut stool
1022
950
-
Asn
GTT
[ENA]
¢þ
>WENV181591570
OGKQ01003606
[OGKQ] metagenome; Human gut stool
1026
952
-
Val
TAC
[ENA]
¢þ
>WENV181591548
OGKQ01002189
[OGKQ] metagenome; Human gut stool
1111
1037
-
Ile
GAT
[ENA]
¢þ
>WENV181591557
OGKQ01002601
[OGKQ] metagenome; Human gut stool
1137
1209
+
Gly
GCC
[ENA]
¢þ
>WENV181591553
OGKQ01002527
[OGKQ] metagenome; Human gut stool
1142
1053
-
Ser
GCT
[ENA]
¢þ
>WENV181591560
OGKQ01003264
[OGKQ] metagenome; Human gut stool
1145
1071
-
Thr
TGT
[ENA]
¢þ
>WENV181591533
OGKQ01000998
[OGKQ] metagenome; Human gut stool
1263
1336
+
Trp
CCA
[ENA]
¢þ
>WENV181591550
OGKQ01002238
[OGKQ] metagenome; Human gut stool
1430
1354
-
Arg
ACG
[ENA]
¢þ
>WENV181591546
OGKQ01001879
[OGKQ] metagenome; Human gut stool
1538
1612
+
Asn
GTT
[ENA]
¢þ
>WENV181591526
OGKQ01000682
[OGKQ] metagenome; Human gut stool
1587
1512
-
Gly
CCC
[ENA]
¢þ
>WENV181591547
OGKQ01001879
[OGKQ] metagenome; Human gut stool
1638
1712
+
Asn
GTT
[ENA]
¢þ
>WENV181591534
OGKQ01000999
[OGKQ] metagenome; Human gut stool
1667
1740
+
Thr
CGT
[ENA]
¢þ
>WENV181591537
OGKQ01001178
[OGKQ] metagenome; Human gut stool
1690
1615
-
Pro
GGG
[ENA]
¢þ
>WENV181591531
OGKQ01000774
[OGKQ] metagenome; Human gut stool
2201
2275
+
Ala
GGC
[ENA]
¢þ
>WENV181591524
OGKQ01000596
[OGKQ] metagenome; Human gut stool
2445
2371
-
Ala
GGC
[ENA]
¢þ
>WENV181591535
OGKQ01001006
[OGKQ] metagenome; Human gut stool
2756
2839
+
Tyr
GTA
[ENA]
¢þ
>WENV181591536
OGKQ01001060
[OGKQ] metagenome; Human gut stool
2813
2728
-
Ser
TGA
[ENA]
¢þ
>WENV181591528
OGKQ01000701
[OGKQ] metagenome; Human gut stool
3605
3679
+
Glu
CTC
[ENA]
¢þ
>WENV181591511
OGKQ01000138
[OGKQ] metagenome; Human gut stool
3828
3901
+
fMet
CAT
[ENA]
¢þ
>WENV181591518
OGKQ01000328
[OGKQ] metagenome; Human gut stool
4079
4161
+
Leu
TAG
[ENA]
¢þ
>WENV181591521
OGKQ01000455
[OGKQ] metagenome; Human gut stool
4625
4696
+
Gln
TTG
[ENA]
¢þ
>WENV181591509
OGKQ01000083
[OGKQ] metagenome; Human gut stool
4918
4845
-
Pro
CGG
[ENA]
¢þ
>WENV181591508
OGKQ01000083
[OGKQ] metagenome; Human gut stool
5081
5154
+
Phe
GAA
[ENA]
¢þ
>WENV181591505
OGKQ01000012
[OGKQ] metagenome; Human gut stool
5175
5248
+
Gly
GCC
[ENA]
¢þ
>WENV181591519
OGKQ01000399
[OGKQ] metagenome; Human gut stool
5186
5101
-
Ser
TGA
[ENA]
¢þ
>WENV181591506
OGKQ01000012
[OGKQ] metagenome; Human gut stool
5264
5348
+
Leu
TAA
[ENA]
¢þ
>WENV181591517
OGKQ01000276
[OGKQ] metagenome; Human gut stool
5947
6030
+
Tyr
GTA
[ENA]
¢þ
>WENV181591507
OGKQ01000029
[OGKQ] metagenome; Human gut stool
6170
6244
+
Ile2
CAT
[ENA]
¢þ
>WENV181591514
OGKQ01000233
[OGKQ] metagenome; Human gut stool
6402
6330
-
Glu
TTC
[ENA]
¢þ
>WENV181591504
OGKQ01000001
[OGKQ] metagenome; Human gut stool
81183
81094
-
Leu
TAG
[ENA]
¢þ
>WENV181591503
OGKQ01000001
[OGKQ] metagenome; Human gut stool
81361
81287
-
Asn
GTT
[ENA]
¢þ
>WENV181591502
OGKQ01000001
[OGKQ] metagenome; Human gut stool
81537
81465
-
Gly
GCC
[ENA]
¢þ
>WENV181591501
OGKQ01000001
[OGKQ] metagenome; Human gut stool
81918
81843
-
Gly
TCC
[ENA]
¢þ
>WENV181591500
OGKQ01000001
[OGKQ] metagenome; Human gut stool
82570
82486
-
Tyr
GTA
[ENA]
¢þ
>WENV181591499
OGKQ01000001
[OGKQ] metagenome; Human gut stool
82657
82585
-
Gln
TTG
[ENA]
¢þ
>WENV181591498
OGKQ01000001
[OGKQ] metagenome; Human gut stool
82989
82917
-
Asp
GTC
[ENA]
¢þ
>WENV181591497
OGKQ01000001
[OGKQ] metagenome; Human gut stool
83289
83216
-
Asp
GTC
[ENA]
¢þ
>WENV181591496
OGKQ01000001
[OGKQ] metagenome; Human gut stool
84195
84121
-
Thr
TGT
[ENA]
¢þ
>WENV181591495
OGKQ01000001
[OGKQ] metagenome; Human gut stool
84609
84524
-
Glu
TTC
[ENA]
¢þ
>WENV181591494
OGKQ01000001
[OGKQ] metagenome; Human gut stool
84694
84620
-
Ala
TGC
[ENA]
¢þ
>WENV181591493
OGKQ01000001
[OGKQ] metagenome; Human gut stool
84775
84703
-
fMet
CAT
[ENA]
¢þ
>WENV181591492
OGKQ01000001
[OGKQ] metagenome; Human gut stool
84915
84843
-
Cys
GCA
[ENA]
¢þ
>WENV181591491
OGKQ01000001
[OGKQ] metagenome; Human gut stool
85010
84937
-
Thr
TGT
[ENA]
¢þ
>WENV181591490
OGKQ01000001
[OGKQ] metagenome; Human gut stool
85115
85043
-
Glu
TTC
[ENA]
¢þ
>WENV181591489
OGKQ01000001
[OGKQ] metagenome; Human gut stool
85570
85496
-
Ile2
CAT
[ENA]
¢þ
>WENV181591488
OGKQ01000001
[OGKQ] metagenome; Human gut stool
86125
86050
-
Phe
GAA
[ENA]
¢þ
>WENV181591487
OGKQ01000001
[OGKQ] metagenome; Human gut stool
87337
87264
-
Pro
TGG
[ENA]
¢þ
>WENV181591486
OGKQ01000001
[OGKQ] metagenome; Human gut stool
87417
87342
-
Pro
TGG
[ENA]
¢þ
>WENV181591485
OGKQ01000001
[OGKQ] metagenome; Human gut stool
87701
87629
-
Met
CAT
[ENA]
¢þ
>WENV181591484
OGKQ01000001
[OGKQ] metagenome; Human gut stool
88095
88021
-
Val
TAC
[ENA]
¢þ
>WENV181591483
OGKQ01000001
[OGKQ] metagenome; Human gut stool
89870
89797
-
His
GTG
[ENA]
¢þ
>WENV181591482
OGKQ01000001
[OGKQ] metagenome; Human gut stool
90509
90418
-
Ser
TGA
[ENA]
¢þ
>WENV181591481
OGKQ01000001
[OGKQ] metagenome; Human gut stool
90590
90518
-
Trp
CCA
[ENA]
¢þ
>WENV181591480
OGKQ01000001
[OGKQ] metagenome; Human gut stool
92558
92484
-
Asn
GTT
[ENA]
¢þ
>WENV181591479
OGKQ01000001
[OGKQ] metagenome; Human gut stool
93739
93652
-
Leu
TAA
[ENA]
¢þ
>WENV181591478
OGKQ01000001
[OGKQ] metagenome; Human gut stool
288244
288329
+
Leu
CAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK