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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
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|
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HOW TO USE
tRNA gene List
[OGKV] metagenome; Human gut stool
HIT:
101 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV181594817
OGKV01003069
[OGKV] metagenome; Human gut stool
3
77
+
Met
CAT
[ENA]
¢þ
>WENV181594814
OGKV01001881
[OGKV] metagenome; Human gut stool
18
100
+
Leu
TAG
[ENA]
¢þ
>WENV181594813
OGKV01001710
[OGKV] metagenome; Human gut stool
33
105
+
Thr
CGT
[ENA]
¢þ
>WENV181594811
OGKV01001544
[OGKV] metagenome; Human gut stool
37
108
+
Arg
CCG
[ENA]
¢þ
>WENV181594783
OGKV01000099
[OGKV] metagenome; Human gut stool
86
4
-
Tyr
GTA
[ENA]
¢þ
>WENV181594762
OGKV01000053
[OGKV] metagenome; Human gut stool
123
195
+
Glu
CTC
[ENA]
¢þ
>WENV181594792
OGKV01000148
[OGKV] metagenome; Human gut stool
127
56
-
Cys
GCA
[ENA]
¢þ
>WENV181594752
OGKV01000032
[OGKV] metagenome; Human gut stool
132
203
+
Trp
CCA
[ENA]
¢þ
>WENV181594794
OGKV01000177
[OGKV] metagenome; Human gut stool
146
71
-
Pro
TGG
[ENA]
¢þ
>WENV181594745
OGKV01000025
[OGKV] metagenome; Human gut stool
152
224
+
Thr
GGT
[ENA]
¢þ
>WENV181594789
OGKV01000131
[OGKV] metagenome; Human gut stool
166
79
-
Ser
GCT
[ENA]
¢þ
>WENV181594802
OGKV01000612
[OGKV] metagenome; Human gut stool
216
289
+
Thr
TGT
[ENA]
¢þ
>WENV181594795
OGKV01000179
[OGKV] metagenome; Human gut stool
227
300
+
Trp
CCA
[ENA]
¢þ
>WENV181594820
OGKV01004760
[OGKV] metagenome; Human gut stool
321
246
-
Val
GAC
[ENA]
¢þ
>WENV181594818
OGKV01004290
[OGKV] metagenome; Human gut stool
331
405
+
Thr
GGT
[ENA]
¢þ
>WENV181594803
OGKV01000612
[OGKV] metagenome; Human gut stool
363
437
+
Lys
TTT
[ENA]
¢þ
>WENV181594819
OGKV01004515
[OGKV] metagenome; Human gut stool
393
470
+
Leu
TAA
[ENA]
¢þ
>WENV181594799
OGKV01000481
[OGKV] metagenome; Human gut stool
445
519
+
Ile2
CAT
[ENA]
¢þ
>WENV181594801
OGKV01000581
[OGKV] metagenome; Human gut stool
660
587
-
Pro
CGG
[ENA]
¢þ
>WENV181594810
OGKV01001493
[OGKV] metagenome; Human gut stool
699
626
-
Ile2
CAT
[ENA]
¢þ
>WENV181594816
OGKV01002204
[OGKV] metagenome; Human gut stool
713
640
-
Lys
CTT
[ENA]
¢þ
>WENV181594815
OGKV01001994
[OGKV] metagenome; Human gut stool
748
660
-
Ser
GGA
[ENA]
¢þ
>WENV181594812
OGKV01001656
[OGKV] metagenome; Human gut stool
783
856
+
Pro
CGG
[ENA]
¢þ
>WENV181594800
OGKV01000581
[OGKV] metagenome; Human gut stool
841
916
+
Phe
GAA
[ENA]
¢þ
>WENV181594804
OGKV01000750
[OGKV] metagenome; Human gut stool
880
954
+
Glu
CTC
[ENA]
¢þ
>WENV181594805
OGKV01000750
[OGKV] metagenome; Human gut stool
958
1032
+
Gly
TCC
[ENA]
¢þ
>WENV181594808
OGKV01000764
[OGKV] metagenome; Human gut stool
1010
937
-
Lys
TTT
[ENA]
¢þ
>WENV181594787
OGKV01000115
[OGKV] metagenome; Human gut stool
1023
952
-
fMet
CAT
[ENA]
¢þ
>WENV181594806
OGKV01000750
[OGKV] metagenome; Human gut stool
1079
1153
+
Gly
GCC
[ENA]
¢þ
>WENV181594809
OGKV01000841
[OGKV] metagenome; Human gut stool
1127
1200
+
Trp
CCA
[ENA]
¢þ
>WENV181594807
OGKV01000750
[OGKV] metagenome; Human gut stool
1183
1257
+
Cys
GCA
[ENA]
¢þ
>WENV181594786
OGKV01000115
[OGKV] metagenome; Human gut stool
1205
1121
-
Tyr
GTA
[ENA]
¢þ
>WENV181594746
OGKV01000025
[OGKV] metagenome; Human gut stool
1552
1625
+
Trp
CCA
[ENA]
¢þ
>WENV181594785
OGKV01000115
[OGKV] metagenome; Human gut stool
1586
1514
-
Ile2
CAT
[ENA]
¢þ
>WENV181594775
OGKV01000087
[OGKV] metagenome; Human gut stool
1591
1664
+
fMet
CAT
[ENA]
¢þ
>WENV181594796
OGKV01000206
[OGKV] metagenome; Human gut stool
1703
1632
-
Gln
TTG
[ENA]
¢þ
>WENV181594784
OGKV01000115
[OGKV] metagenome; Human gut stool
1892
1820
-
Gln
TTG
[ENA]
¢þ
>WENV181594788
OGKV01000127
[OGKV] metagenome; Human gut stool
2044
2132
+
Ser
GGA
[ENA]
¢þ
>WENV181594798
OGKV01000250
[OGKV] metagenome; Human gut stool
2163
2089
-
Ala
TGC
[ENA]
¢þ
>WENV181594797
OGKV01000250
[OGKV] metagenome; Human gut stool
2254
2180
-
Ile
GAT
[ENA]
¢þ
>WENV181594791
OGKV01000132
[OGKV] metagenome; Human gut stool
3195
3120
-
Thr
TGT
[ENA]
¢þ
>WENV181594793
OGKV01000177
[OGKV] metagenome; Human gut stool
3439
3366
-
Arg
ACG
[ENA]
¢þ
>WENV181594730
OGKV01000007
[OGKV] metagenome; Human gut stool
5055
4981
-
Met
CAT
[ENA]
¢þ
>WENV181594782
OGKV01000098
[OGKV] metagenome; Human gut stool
5267
5193
-
fMet
CAT
[ENA]
¢þ
>WENV181594761
OGKV01000048
[OGKV] metagenome; Human gut stool
5776
5849
+
Phe
GAA
[ENA]
¢þ
>WENV181594781
OGKV01000098
[OGKV] metagenome; Human gut stool
6278
6195
-
Ser
GCT
[ENA]
¢þ
>WENV181594772
OGKV01000070
[OGKV] metagenome; Human gut stool
6537
6462
-
Val
TAC
[ENA]
¢þ
>WENV181594780
OGKV01000098
[OGKV] metagenome; Human gut stool
6747
6676
-
Asn
GTT
[ENA]
¢þ
>WENV181594779
OGKV01000098
[OGKV] metagenome; Human gut stool
6826
6750
-
Arg
ACG
[ENA]
¢þ
>WENV181594778
OGKV01000098
[OGKV] metagenome; Human gut stool
7666
7593
-
Glu
TTC
[ENA]
¢þ
>WENV181594777
OGKV01000098
[OGKV] metagenome; Human gut stool
8612
8538
-
Ile2
CAT
[ENA]
¢þ
>WENV181594776
OGKV01000098
[OGKV] metagenome; Human gut stool
8786
8713
-
Phe
GAA
[ENA]
¢þ
>WENV181594790
OGKV01000132
[OGKV] metagenome; Human gut stool
9043
8969
-
Lys
TTT
[ENA]
¢þ
>WENV181594751
OGKV01000029
[OGKV] metagenome; Human gut stool
9872
9797
-
Pro
CGG
[ENA]
¢þ
>WENV181594750
OGKV01000029
[OGKV] metagenome; Human gut stool
10028
10101
+
Phe
GAA
[ENA]
¢þ
>WENV181594773
OGKV01000077
[OGKV] metagenome; Human gut stool
12740
12821
+
Leu
TAG
[ENA]
¢þ
>WENV181594767
OGKV01000058
[OGKV] metagenome; Human gut stool
13026
13099
+
Asn
GTT
[ENA]
¢þ
>WENV181594742
OGKV01000022
[OGKV] metagenome; Human gut stool
13247
13173
-
Thr
TGT
[ENA]
¢þ
>WENV181594768
OGKV01000058
[OGKV] metagenome; Human gut stool
13926
14001
+
Pro
TGG
[ENA]
¢þ
>WENV181594736
OGKV01000015
[OGKV] metagenome; Human gut stool
15444
15369
-
His
GTG
[ENA]
¢þ
>WENV181594755
OGKV01000036
[OGKV] metagenome; Human gut stool
15477
15406
-
Gly
TCC
[ENA]
¢þ
>WENV181594747
OGKV01000027
[OGKV] metagenome; Human gut stool
15987
16071
+
Leu
CAA
[ENA]
¢þ
>WENV181594720
OGKV01000001
[OGKV] metagenome; Human gut stool
16751
16822
+
Thr
GGT
[ENA]
¢þ
>WENV181594769
OGKV01000058
[OGKV] metagenome; Human gut stool
17212
17295
+
Tyr
GTA
[ENA]
¢þ
>WENV181594741
OGKV01000022
[OGKV] metagenome; Human gut stool
18841
18756
-
Ser
TGA
[ENA]
¢þ
>WENV181594774
OGKV01000086
[OGKV] metagenome; Human gut stool
20003
19931
-
Lys
CTT
[ENA]
¢þ
>WENV181594756
OGKV01000042
[OGKV] metagenome; Human gut stool
20453
20524
+
Gln
TTG
[ENA]
¢þ
>WENV181594770
OGKV01000058
[OGKV] metagenome; Human gut stool
20977
21065
+
Ser
GCT
[ENA]
¢þ
>WENV181594740
OGKV01000022
[OGKV] metagenome; Human gut stool
22481
22408
-
Phe
GAA
[ENA]
¢þ
>WENV181594766
OGKV01000056
[OGKV] metagenome; Human gut stool
23358
23285
-
Lys
CTT
[ENA]
¢þ
>WENV181594754
OGKV01000035
[OGKV] metagenome; Human gut stool
26007
25933
-
Met
CAT
[ENA]
¢þ
>WENV181594753
OGKV01000035
[OGKV] metagenome; Human gut stool
26111
26037
-
Val
TAC
[ENA]
¢þ
>WENV181594764
OGKV01000055
[OGKV] metagenome; Human gut stool
26293
26222
-
Gly
CCC
[ENA]
¢þ
>WENV181594763
OGKV01000055
[OGKV] metagenome; Human gut stool
26398
26325
-
Thr
CGT
[ENA]
¢þ
>WENV181594758
OGKV01000042
[OGKV] metagenome; Human gut stool
27573
27501
-
Arg
CCT
[ENA]
¢þ
>WENV181594760
OGKV01000046
[OGKV] metagenome; Human gut stool
28474
28402
-
Glu
CTC
[ENA]
¢þ
>WENV181594765
OGKV01000056
[OGKV] metagenome; Human gut stool
30231
30305
+
Asp
GTC
[ENA]
¢þ
>WENV181594748
OGKV01000027
[OGKV] metagenome; Human gut stool
31171
31245
+
Asn
GTT
[ENA]
¢þ
>WENV181594771
OGKV01000061
[OGKV] metagenome; Human gut stool
32901
32828
-
Lys
CTT
[ENA]
¢þ
>WENV181594757
OGKV01000042
[OGKV] metagenome; Human gut stool
43281
43194
-
Leu
TAA
[ENA]
¢þ
>WENV181594727
OGKV01000006
[OGKV] metagenome; Human gut stool
46255
46330
+
Arg
CCG
[ENA]
¢þ
>WENV181594759
OGKV01000044
[OGKV] metagenome; Human gut stool
49701
49790
+
Ser
GCT
[ENA]
¢þ
>WENV181594749
OGKV01000027
[OGKV] metagenome; Human gut stool
52503
52577
+
Ile2
CAT
[ENA]
¢þ
>WENV181594732
OGKV01000011
[OGKV] metagenome; Human gut stool
56131
56204
+
Gln
CTG
[ENA]
¢þ
>WENV181594739
OGKV01000021
[OGKV] metagenome; Human gut stool
63569
63498
-
Gln
CTG
[ENA]
¢þ
>WENV181594737
OGKV01000017
[OGKV] metagenome; Human gut stool
75074
75160
+
Leu
TAA
[ENA]
¢þ
>WENV181594743
OGKV01000023
[OGKV] metagenome; Human gut stool
77688
77760
+
Gly
GCC
[ENA]
¢þ
>WENV181594738
OGKV01000019
[OGKV] metagenome; Human gut stool
78201
78274
+
Lys
TTT
[ENA]
¢þ
>WENV181594744
OGKV01000023
[OGKV] metagenome; Human gut stool
79305
79377
+
Gly
GCC
[ENA]
¢þ
>WENV181594726
OGKV01000005
[OGKV] metagenome; Human gut stool
83140
83058
-
Leu
TAG
[ENA]
¢þ
>WENV181594735
OGKV01000013
[OGKV] metagenome; Human gut stool
99097
99026
-
Cys
GCA
[ENA]
¢þ
>WENV181594734
OGKV01000013
[OGKV] metagenome; Human gut stool
99183
99112
-
Glu
TTC
[ENA]
¢þ
>WENV181594733
OGKV01000013
[OGKV] metagenome; Human gut stool
99298
99226
-
Asn
GTT
[ENA]
¢þ
>WENV181594724
OGKV01000002
[OGKV] metagenome; Human gut stool
104267
104349
+
Leu
CAA
[ENA]
¢þ
>WENV181594731
OGKV01000009
[OGKV] metagenome; Human gut stool
119540
119614
+
Pro
TGG
[ENA]
¢þ
>WENV181594728
OGKV01000006
[OGKV] metagenome; Human gut stool
129740
129814
+
Pro
CGG
[ENA]
¢þ
>WENV181594723
OGKV01000001
[OGKV] metagenome; Human gut stool
141964
141881
-
Leu
CAG
[ENA]
¢þ
>WENV181594721
OGKV01000001
[OGKV] metagenome; Human gut stool
142168
142253
+
Leu
AAG
[ENA]
¢þ
>WENV181594729
OGKV01000007
[OGKV] metagenome; Human gut stool
147707
147782
+
Arg
TCT
[ENA]
¢þ
>WENV181594722
OGKV01000001
[OGKV] metagenome; Human gut stool
246516
246588
+
Thr
CGT
[ENA]
¢þ
>WENV181594725
OGKV01000003
[OGKV] metagenome; Human gut stool
247069
247155
+
Ser
TGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK