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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OHCV] human gut metagenome; feces
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182032517
OHCV01000729
[OHCV] human gut metagenome; feces
37
112
+
Val
GAC
[ENA]
¢þ
>WENV182032516
OHCV01000616
[OHCV] human gut metagenome; feces
108
33
-
Pro
TGG
[ENA]
¢þ
>WENV182032519
OHCV01001200
[OHCV] human gut metagenome; feces
142
68
-
Thr
TGT
[ENA]
¢þ
>WENV182032515
OHCV01000616
[OHCV] human gut metagenome; feces
216
143
-
Trp
CCA
[ENA]
¢þ
>WENV182032520
OHCV01001430
[OHCV] human gut metagenome; feces
221
147
-
Gly
GCC
[ENA]
¢þ
>WENV182032518
OHCV01000941
[OHCV] human gut metagenome; feces
269
194
-
Trp
CCA
[ENA]
¢þ
>WENV182032514
OHCV01000584
[OHCV] human gut metagenome; feces
310
239
-
Gln
TTG
[ENA]
¢þ
>WENV182032513
OHCV01000314
[OHCV] human gut metagenome; feces
336
260
-
Asn
GTT
[ENA]
¢þ
>WENV182032502
OHCV01000133
[OHCV] human gut metagenome; feces
371
446
+
Phe
GAA
[ENA]
¢þ
>WENV182032509
OHCV01000299
[OHCV] human gut metagenome; feces
401
484
+
Tyr
GTA
[ENA]
¢þ
>WENV182032508
OHCV01000258
[OHCV] human gut metagenome; feces
434
519
+
Ser
TGA
[ENA]
¢þ
>WENV182032512
OHCV01000314
[OHCV] human gut metagenome; feces
452
378
-
Glu
CTC
[ENA]
¢þ
>WENV182032503
OHCV01000133
[OHCV] human gut metagenome; feces
477
552
+
Gly
GCC
[ENA]
¢þ
>WENV182032510
OHCV01000299
[OHCV] human gut metagenome; feces
578
650
+
Thr
GGT
[ENA]
¢þ
>WENV182032504
OHCV01000133
[OHCV] human gut metagenome; feces
583
659
+
Asp
GTC
[ENA]
¢þ
>WENV182032511
OHCV01000314
[OHCV] human gut metagenome; feces
620
544
-
Met
CAT
[ENA]
¢þ
>WENV182032505
OHCV01000133
[OHCV] human gut metagenome; feces
663
738
+
Thr
GGT
[ENA]
¢þ
>WENV182032507
OHCV01000251
[OHCV] human gut metagenome; feces
870
795
-
Ala
TGC
[ENA]
¢þ
>WENV182032506
OHCV01000133
[OHCV] human gut metagenome; feces
946
871
-
Trp
CCA
[ENA]
¢þ
>WENV182032499
OHCV01000006
[OHCV] human gut metagenome; feces
2132
2056
-
Ala
TGC
[ENA]
¢þ
>WENV182032498
OHCV01000006
[OHCV] human gut metagenome; feces
2223
2149
-
Ile
GAT
[ENA]
¢þ
>WENV182032501
OHCV01000014
[OHCV] human gut metagenome; feces
3115
3040
-
Phe
GAA
[ENA]
¢þ
>WENV182032500
OHCV01000014
[OHCV] human gut metagenome; feces
3282
3355
+
Pro
CGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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