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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHED] human gut metagenome; feces
HIT:
21 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182049917
OHED01001552
[OHED] human gut metagenome; feces
131
60
-
Gln
TTG
[ENA]
¢þ
>WENV182049922
OHED01002590
[OHED] human gut metagenome; feces
132
44
-
Ser
GGA
[ENA]
¢þ
>WENV182049924
OHED01003597
[OHED] human gut metagenome; feces
151
67
-
Leu
CAG
[ENA]
¢þ
>WENV182049913
OHED01000311
[OHED] human gut metagenome; feces
163
89
-
Ile
GAT
[ENA]
¢þ
>WENV182049926
OHED01006318
[OHED] human gut metagenome; feces
168
250
+
Arg
GCG
[ENA]
¢þ
>WENV182049925
OHED01005545
[OHED] human gut metagenome; feces
251
179
-
Glu
TTC
[ENA]
¢þ
>WENV182049923
OHED01003597
[OHED] human gut metagenome; feces
258
185
-
Gly
GCC
[ENA]
¢þ
>WENV182049927
OHED01007054
[OHED] human gut metagenome; feces
367
442
+
Gly
CCC
[ENA]
¢þ
>WENV182049916
OHED01000830
[OHED] human gut metagenome; feces
398
471
+
Trp
CCA
[ENA]
¢þ
>WENV182049918
OHED01001636
[OHED] human gut metagenome; feces
594
667
+
Phe
GAA
[ENA]
¢þ
>WENV182049907
OHED01000006
[OHED] human gut metagenome; feces
663
748
+
Ser
TGA
[ENA]
¢þ
>WENV182049919
OHED01001636
[OHED] human gut metagenome; feces
680
753
+
Pro
CGG
[ENA]
¢þ
>WENV182049921
OHED01002037
[OHED] human gut metagenome; feces
712
787
+
Pro
TGG
[ENA]
¢þ
>WENV182049920
OHED01001653
[OHED] human gut metagenome; feces
738
666
-
Glu
TTC
[ENA]
¢þ
>WENV182049914
OHED01000517
[OHED] human gut metagenome; feces
1137
1209
+
Arg
CCT
[ENA]
¢þ
>WENV182049912
OHED01000258
[OHED] human gut metagenome; feces
1212
1130
-
Leu
TAG
[ENA]
¢þ
>WENV182049915
OHED01000653
[OHED] human gut metagenome; feces
1270
1344
+
Arg
TCT
[ENA]
¢þ
>WENV182049911
OHED01000143
[OHED] human gut metagenome; feces
1417
1345
-
Thr
GGT
[ENA]
¢þ
>WENV182049910
OHED01000143
[OHED] human gut metagenome; feces
1591
1508
-
Tyr
GTA
[ENA]
¢þ
>WENV182049908
OHED01000044
[OHED] human gut metagenome; feces
1667
1743
+
Ile
GAT
[ENA]
¢þ
>WENV182049909
OHED01000044
[OHED] human gut metagenome; feces
1806
1880
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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