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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHFJ] human gut metagenome; feces
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182070667
OHFJ01001750
[OHFJ] human gut metagenome; feces
91
16
-
Pro
GGG
[ENA]
¢þ
>WENV182070673
OHFJ01002341
[OHFJ] human gut metagenome; feces
110
35
-
Gly
CCC
[ENA]
¢þ
>WENV182070668
OHFJ01001832
[OHFJ] human gut metagenome; feces
223
296
+
Ala
TGC
[ENA]
¢þ
>WENV182070669
OHFJ01001938
[OHFJ] human gut metagenome; feces
320
246
-
Ile2
CAT
[ENA]
¢þ
>WENV182070671
OHFJ01002121
[OHFJ] human gut metagenome; feces
340
416
+
Pro
AGG
[ENA]
¢þ
>WENV182070666
OHFJ01001487
[OHFJ] human gut metagenome; feces
352
281
-
Gln
TTG
[ENA]
¢þ
>WENV182070672
OHFJ01002238
[OHFJ] human gut metagenome; feces
386
313
-
Trp
CCA
[ENA]
¢þ
>WENV182070662
OHFJ01000653
[OHFJ] human gut metagenome; feces
410
495
+
Ser
TGA
[ENA]
¢þ
>WENV182070670
OHFJ01001957
[OHFJ] human gut metagenome; feces
478
405
-
Ile
GAT
[ENA]
¢þ
>WENV182070663
OHFJ01000953
[OHFJ] human gut metagenome; feces
530
613
+
Tyr
GTA
[ENA]
¢þ
>WENV182070664
OHFJ01000964
[OHFJ] human gut metagenome; feces
640
564
-
Val
TAC
[ENA]
¢þ
>WENV182070665
OHFJ01000987
[OHFJ] human gut metagenome; feces
641
716
+
Phe
GAA
[ENA]
¢þ
>WENV182070660
OHFJ01000436
[OHFJ] human gut metagenome; feces
763
836
+
Lys
CTT
[ENA]
¢þ
>WENV182070661
OHFJ01000436
[OHFJ] human gut metagenome; feces
860
933
+
Lys
CTT
[ENA]
¢þ
>WENV182070659
OHFJ01000140
[OHFJ] human gut metagenome; feces
1420
1348
-
Thr
GGT
[ENA]
¢þ
>WENV182070656
OHFJ01000018
[OHFJ] human gut metagenome; feces
2648
2720
+
Asn
GTT
[ENA]
¢þ
>WENV182070657
OHFJ01000018
[OHFJ] human gut metagenome; feces
2734
2805
+
Glu
TTC
[ENA]
¢þ
>WENV182070658
OHFJ01000018
[OHFJ] human gut metagenome; feces
2837
2910
+
Ile2
CAT
[ENA]
¢þ
>WENV182070655
OHFJ01000004
[OHFJ] human gut metagenome; feces
4600
4526
-
Ala
TGC
[ENA]
¢þ
>WENV182070654
OHFJ01000004
[OHFJ] human gut metagenome; feces
4691
4617
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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