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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OHGB] human gut metagenome; feces
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182078872
OHGB01000090
[OHGB] human gut metagenome; feces
147
222
+
Pro
TGG
[ENA]
¢þ
>WENV182078891
OHGB01001547
[OHGB] human gut metagenome; feces
196
268
+
Arg
CCT
[ENA]
¢þ
>WENV182078863
OHGB01000050
[OHGB] human gut metagenome; feces
266
339
+
Phe
GAA
[ENA]
¢þ
>WENV182078873
OHGB01000104
[OHGB] human gut metagenome; feces
278
351
+
fMet
CAT
[ENA]
¢þ
>WENV182078893
OHGB01002086
[OHGB] human gut metagenome; feces
352
267
-
Leu
TAA
[ENA]
¢þ
>WENV182078864
OHGB01000050
[OHGB] human gut metagenome; feces
356
429
+
Pro
CGG
[ENA]
¢þ
>WENV182078890
OHGB01001292
[OHGB] human gut metagenome; feces
363
275
-
Ser
GGA
[ENA]
¢þ
>WENV182078894
OHGB01002404
[OHGB] human gut metagenome; feces
366
293
-
Lys
TTT
[ENA]
¢þ
>WENV182078887
OHGB01000943
[OHGB] human gut metagenome; feces
372
447
+
Ile
TAT
[ENA]
¢þ
>WENV182078892
OHGB01002086
[OHGB] human gut metagenome; feces
441
368
-
Gly
GCC
[ENA]
¢þ
>WENV182078888
OHGB01000943
[OHGB] human gut metagenome; feces
451
526
+
Phe
GAA
[ENA]
¢þ
>WENV182078886
OHGB01000454
[OHGB] human gut metagenome; feces
558
486
-
Thr
GGT
[ENA]
¢þ
>WENV182078874
OHGB01000104
[OHGB] human gut metagenome; feces
568
641
+
Asn
GTT
[ENA]
¢þ
>WENV182078889
OHGB01000948
[OHGB] human gut metagenome; feces
576
649
+
fMet
CAT
[ENA]
¢þ
>WENV182078881
OHGB01000281
[OHGB] human gut metagenome; feces
625
550
-
Pro
GGG
[ENA]
¢þ
>WENV182078875
OHGB01000104
[OHGB] human gut metagenome; feces
648
721
+
Trp
CCA
[ENA]
¢þ
>WENV182078885
OHGB01000454
[OHGB] human gut metagenome; feces
659
575
-
Tyr
GTA
[ENA]
¢þ
>WENV182078880
OHGB01000192
[OHGB] human gut metagenome; feces
719
647
-
Glu
TTC
[ENA]
¢þ
>WENV182078876
OHGB01000104
[OHGB] human gut metagenome; feces
726
797
+
Gln
TTG
[ENA]
¢þ
>WENV182078884
OHGB01000454
[OHGB] human gut metagenome; feces
751
677
-
Thr
TGT
[ENA]
¢þ
>WENV182078877
OHGB01000104
[OHGB] human gut metagenome; feces
802
874
+
Glu
TTC
[ENA]
¢þ
>WENV182078883
OHGB01000379
[OHGB] human gut metagenome; feces
805
890
+
Ser
TGA
[ENA]
¢þ
>WENV182078871
OHGB01000073
[OHGB] human gut metagenome; feces
858
785
-
Trp
CCA
[ENA]
¢þ
>WENV182078882
OHGB01000289
[OHGB] human gut metagenome; feces
891
807
-
Leu
CAA
[ENA]
¢þ
>WENV182078878
OHGB01000104
[OHGB] human gut metagenome; feces
1037
1119
+
Tyr
GTA
[ENA]
¢þ
>WENV182078865
OHGB01000068
[OHGB] human gut metagenome; feces
1059
1133
+
Asp
GTC
[ENA]
¢þ
>WENV182078862
OHGB01000045
[OHGB] human gut metagenome; feces
1117
1045
-
Arg
CCT
[ENA]
¢þ
>WENV182078866
OHGB01000068
[OHGB] human gut metagenome; feces
1165
1239
+
Val
TAC
[ENA]
¢þ
>WENV182078879
OHGB01000138
[OHGB] human gut metagenome; feces
1204
1279
+
Asn
GTT
[ENA]
¢þ
>WENV182078867
OHGB01000068
[OHGB] human gut metagenome; feces
1259
1345
+
Leu
TAA
[ENA]
¢þ
>WENV182078868
OHGB01000068
[OHGB] human gut metagenome; feces
1349
1425
+
fMet
CAT
[ENA]
¢þ
>WENV182078869
OHGB01000068
[OHGB] human gut metagenome; feces
1464
1539
+
Gly
TCC
[ENA]
¢þ
>WENV182078870
OHGB01000068
[OHGB] human gut metagenome; feces
1545
1619
+
Arg
TCT
[ENA]
¢þ
>WENV182078861
OHGB01000037
[OHGB] human gut metagenome; feces
2235
2162
-
Ala
TGC
[ENA]
¢þ
>WENV182078859
OHGB01000012
[OHGB] human gut metagenome; feces
2911
2985
+
Ile
GAT
[ENA]
¢þ
>WENV182078860
OHGB01000012
[OHGB] human gut metagenome; feces
3002
3076
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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