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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OHGC] human gut metagenome; feces
HIT:
28 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182078914
OHGC01002203
[OHGC] human gut metagenome; feces
33
107
+
Pro
TGG
[ENA]
¢þ
>WENV182078910
OHGC01001185
[OHGC] human gut metagenome; feces
69
145
+
Ile
GAT
[ENA]
¢þ
>WENV182078921
OHGC01003805
[OHGC] human gut metagenome; feces
83
166
+
Tyr
GTA
[ENA]
¢þ
>WENV182078901
OHGC01000446
[OHGC] human gut metagenome; feces
96
20
-
His
GTG
[ENA]
¢þ
>WENV182078913
OHGC01002168
[OHGC] human gut metagenome; feces
127
54
-
Trp
CCA
[ENA]
¢þ
>WENV182078911
OHGC01001469
[OHGC] human gut metagenome; feces
165
89
-
fMet
CAT
[ENA]
¢þ
>WENV182078919
OHGC01003156
[OHGC] human gut metagenome; feces
169
94
-
Lys
CTT
[ENA]
¢þ
>WENV182078900
OHGC01000446
[OHGC] human gut metagenome; feces
179
103
-
Arg
TCT
[ENA]
¢þ
>WENV182078922
OHGC01003805
[OHGC] human gut metagenome; feces
183
255
+
Thr
GGT
[ENA]
¢þ
>WENV182078915
OHGC01002393
[OHGC] human gut metagenome; feces
228
302
+
Gly
TCC
[ENA]
¢þ
>WENV182078917
OHGC01002758
[OHGC] human gut metagenome; feces
308
232
-
Asn
GTT
[ENA]
¢þ
>WENV182078916
OHGC01002758
[OHGC] human gut metagenome; feces
424
350
-
Glu
CTC
[ENA]
¢þ
>WENV182078920
OHGC01003369
[OHGC] human gut metagenome; feces
437
353
-
Tyr
GTA
[ENA]
¢þ
>WENV182078918
OHGC01003071
[OHGC] human gut metagenome; feces
506
594
+
Ser
GGA
[ENA]
¢þ
>WENV182078912
OHGC01001900
[OHGC] human gut metagenome; feces
804
880
+
Arg
CCG
[ENA]
¢þ
>WENV182078908
OHGC01001108
[OHGC] human gut metagenome; feces
1021
1094
+
Gly
GCC
[ENA]
¢þ
>WENV182078909
OHGC01001108
[OHGC] human gut metagenome; feces
1121
1203
+
Leu
CAG
[ENA]
¢þ
>WENV182078907
OHGC01001009
[OHGC] human gut metagenome; feces
1301
1227
-
Cys
GCA
[ENA]
¢þ
>WENV182078906
OHGC01000743
[OHGC] human gut metagenome; feces
1449
1530
+
Leu
TAG
[ENA]
¢þ
>WENV182078905
OHGC01000717
[OHGC] human gut metagenome; feces
1522
1597
+
Ala
TGC
[ENA]
¢þ
>WENV182078903
OHGC01000542
[OHGC] human gut metagenome; feces
1562
1637
+
Trp
CCA
[ENA]
¢þ
>WENV182078902
OHGC01000483
[OHGC] human gut metagenome; feces
1564
1489
-
Gly
CCC
[ENA]
¢þ
>WENV182078898
OHGC01000167
[OHGC] human gut metagenome; feces
1820
1894
+
Ile
GAT
[ENA]
¢þ
>WENV182078904
OHGC01000542
[OHGC] human gut metagenome; feces
1845
1770
-
Thr
GGT
[ENA]
¢þ
>WENV182078899
OHGC01000167
[OHGC] human gut metagenome; feces
1904
1978
+
Ala
TGC
[ENA]
¢þ
>WENV182078897
OHGC01000106
[OHGC] human gut metagenome; feces
3288
3364
+
Ile2
CAT
[ENA]
¢þ
>WENV182078896
OHGC01000103
[OHGC] human gut metagenome; feces
3401
3327
-
Ala
TGC
[ENA]
¢þ
>WENV182078895
OHGC01000064
[OHGC] human gut metagenome; feces
3895
3970
+
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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