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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA gene List
[OHGF] human gut metagenome; feces
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182079056
OHGF01004564
[OHGF] human gut metagenome; feces
18
92
+
Thr
TGT
[ENA]
¢þ
>WENV182079040
OHGF01001967
[OHGF] human gut metagenome; feces
28
102
+
Lys
TTT
[ENA]
¢þ
>WENV182079010
OHGF01000212
[OHGF] human gut metagenome; feces
41
113
+
Glu
CTC
[ENA]
¢þ
>WENV182079022
OHGF01000485
[OHGF] human gut metagenome; feces
45
119
+
Ala
GGC
[ENA]
¢þ
>WENV182079042
OHGF01002007
[OHGF] human gut metagenome; feces
60
132
+
Arg
CCT
[ENA]
¢þ
>WENV182079048
OHGF01002655
[OHGF] human gut metagenome; feces
71
146
+
Val
TAC
[ENA]
¢þ
>WENV182079050
OHGF01003096
[OHGF] human gut metagenome; feces
89
14
-
Trp
CCA
[ENA]
¢þ
>WENV182079012
OHGF01000242
[OHGF] human gut metagenome; feces
117
44
-
Pro
CGG
[ENA]
¢þ
>WENV182079053
OHGF01003486
[OHGF] human gut metagenome; feces
134
59
-
Gly
GCC
[ENA]
¢þ
>WENV182079035
OHGF01001573
[OHGF] human gut metagenome; feces
147
76
-
Gly
TCC
[ENA]
¢þ
>WENV182079026
OHGF01000908
[OHGF] human gut metagenome; feces
163
73
-
Ser
GCT
[ENA]
¢þ
>WENV182079057
OHGF01004991
[OHGF] human gut metagenome; feces
172
91
-
Leu
TAG
[ENA]
¢þ
>WENV182079047
OHGF01002600
[OHGF] human gut metagenome; feces
201
130
-
Gln
CTG
[ENA]
¢þ
>WENV182079049
OHGF01002856
[OHGF] human gut metagenome; feces
209
134
-
Ala
GGC
[ENA]
¢þ
>WENV182079011
OHGF01000242
[OHGF] human gut metagenome; feces
220
147
-
Gln
CTG
[ENA]
¢þ
>WENV182079058
OHGF01005148
[OHGF] human gut metagenome; feces
281
353
+
Asn
GTT
[ENA]
¢þ
>WENV182079034
OHGF01001573
[OHGF] human gut metagenome; feces
306
232
-
fMet
CAT
[ENA]
¢þ
>WENV182079055
OHGF01004087
[OHGF] human gut metagenome; feces
310
239
-
Glu
TTC
[ENA]
¢þ
>WENV182079036
OHGF01001667
[OHGF] human gut metagenome; feces
328
402
+
Ile2
CAT
[ENA]
¢þ
>WENV182079029
OHGF01001438
[OHGF] human gut metagenome; feces
336
410
+
Met
CAT
[ENA]
¢þ
>WENV182079052
OHGF01003486
[OHGF] human gut metagenome; feces
352
277
-
Phe
GAA
[ENA]
¢þ
>WENV182079033
OHGF01001573
[OHGF] human gut metagenome; feces
441
358
-
Tyr
GTA
[ENA]
¢þ
>WENV182079046
OHGF01002454
[OHGF] human gut metagenome; feces
470
545
+
Thr
GGT
[ENA]
¢þ
>WENV182079054
OHGF01004054
[OHGF] human gut metagenome; feces
482
409
-
Ile
GAT
[ENA]
¢þ
>WENV182079043
OHGF01002104
[OHGF] human gut metagenome; feces
495
580
+
Ser
TGA
[ENA]
¢þ
>WENV182079015
OHGF01000369
[OHGF] human gut metagenome; feces
516
589
+
Phe
GAA
[ENA]
¢þ
>WENV182079014
OHGF01000336
[OHGF] human gut metagenome; feces
532
460
-
Glu
TTC
[ENA]
¢þ
>WENV182079019
OHGF01000451
[OHGF] human gut metagenome; feces
537
620
+
Tyr
GTA
[ENA]
¢þ
>WENV182079032
OHGF01001573
[OHGF] human gut metagenome; feces
539
467
-
Thr
TGT
[ENA]
¢þ
>WENV182079051
OHGF01003486
[OHGF] human gut metagenome; feces
594
520
-
Asp
GTC
[ENA]
¢þ
>WENV182079016
OHGF01000369
[OHGF] human gut metagenome; feces
604
677
+
Pro
CGG
[ENA]
¢þ
>WENV182079031
OHGF01001573
[OHGF] human gut metagenome; feces
620
546
-
Val
TAC
[ENA]
¢þ
>WENV182079045
OHGF01002331
[OHGF] human gut metagenome; feces
643
567
-
His
GTG
[ENA]
¢þ
>WENV182079037
OHGF01001830
[OHGF] human gut metagenome; feces
665
586
-
Leu
CAA
[ENA]
¢þ
>WENV182079041
OHGF01001993
[OHGF] human gut metagenome; feces
675
601
-
Asp
GTC
[ENA]
¢þ
>WENV182079020
OHGF01000451
[OHGF] human gut metagenome; feces
713
785
+
Thr
GGT
[ENA]
¢þ
>WENV182079044
OHGF01002331
[OHGF] human gut metagenome; feces
726
651
-
Arg
TCT
[ENA]
¢þ
>WENV182079030
OHGF01001573
[OHGF] human gut metagenome; feces
726
652
-
Asp
GTC
[ENA]
¢þ
>WENV182079038
OHGF01001887
[OHGF] human gut metagenome; feces
731
804
+
Gly
GCC
[ENA]
¢þ
>WENV182079013
OHGF01000257
[OHGF] human gut metagenome; feces
789
863
+
Asn
GTT
[ENA]
¢þ
>WENV182079039
OHGF01001887
[OHGF] human gut metagenome; feces
831
913
+
Leu
CAG
[ENA]
¢þ
>WENV182079025
OHGF01000860
[OHGF] human gut metagenome; feces
833
905
+
Cys
GCA
[ENA]
¢þ
>WENV182079009
OHGF01000086
[OHGF] human gut metagenome; feces
884
957
+
fMet
CAT
[ENA]
¢þ
>WENV182079017
OHGF01000383
[OHGF] human gut metagenome; feces
979
1063
+
Leu
CAA
[ENA]
¢þ
>WENV182079028
OHGF01001102
[OHGF] human gut metagenome; feces
986
1060
+
Pro
GGG
[ENA]
¢þ
>WENV182079023
OHGF01000575
[OHGF] human gut metagenome; feces
1229
1302
+
Lys
TTT
[ENA]
¢þ
>WENV182079027
OHGF01000958
[OHGF] human gut metagenome; feces
1399
1325
-
Ala
TGC
[ENA]
¢þ
>WENV182079018
OHGF01000384
[OHGF] human gut metagenome; feces
1591
1673
+
Leu
TAG
[ENA]
¢þ
>WENV182079024
OHGF01000585
[OHGF] human gut metagenome; feces
1618
1692
+
Arg
TCT
[ENA]
¢þ
>WENV182079021
OHGF01000451
[OHGF] human gut metagenome; feces
2076
2149
+
Trp
CCA
[ENA]
¢þ
>WENV182079008
OHGF01000063
[OHGF] human gut metagenome; feces
2199
2270
+
Gln
TTG
[ENA]
¢þ
>WENV182079007
OHGF01000010
[OHGF] human gut metagenome; feces
3300
3226
-
Ala
TGC
[ENA]
¢þ
>WENV182079006
OHGF01000010
[OHGF] human gut metagenome; feces
3457
3383
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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