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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHGY] human gut metagenome; feces
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182088586
OHGY01000896
[OHGY] human gut metagenome; feces
114
199
+
Ser
TGA
[ENA]
¢þ
>WENV182088580
OHGY01000505
[OHGY] human gut metagenome; feces
208
134
-
Cys
GCA
[ENA]
¢þ
>WENV182088575
OHGY01000398
[OHGY] human gut metagenome; feces
232
307
+
fMet
CAT
[ENA]
¢þ
>WENV182088578
OHGY01000438
[OHGY] human gut metagenome; feces
277
201
-
Ile
GAT
[ENA]
¢þ
>WENV182088583
OHGY01000529
[OHGY] human gut metagenome; feces
297
212
-
Leu
TAA
[ENA]
¢þ
>WENV182088563
OHGY01000028
[OHGY] human gut metagenome; feces
298
373
+
Ala
TGC
[ENA]
¢þ
>WENV182088576
OHGY01000398
[OHGY] human gut metagenome; feces
312
384
+
Phe
GAA
[ENA]
¢þ
>WENV182088570
OHGY01000116
[OHGY] human gut metagenome; feces
328
256
-
Thr
GGT
[ENA]
¢þ
>WENV182088573
OHGY01000169
[OHGY] human gut metagenome; feces
343
271
-
Glu
TTC
[ENA]
¢þ
>WENV182088577
OHGY01000438
[OHGY] human gut metagenome; feces
368
295
-
Ala
TGC
[ENA]
¢þ
>WENV182088564
OHGY01000028
[OHGY] human gut metagenome; feces
377
453
+
Ile
GAT
[ENA]
¢þ
>WENV182088579
OHGY01000456
[OHGY] human gut metagenome; feces
380
294
-
Leu
CAA
[ENA]
¢þ
>WENV182088582
OHGY01000529
[OHGY] human gut metagenome; feces
386
313
-
Gly
GCC
[ENA]
¢þ
>WENV182088584
OHGY01000669
[OHGY] human gut metagenome; feces
407
478
+
Gln
TTG
[ENA]
¢þ
>WENV182088566
OHGY01000040
[OHGY] human gut metagenome; feces
432
358
-
Val
TAC
[ENA]
¢þ
>WENV182088569
OHGY01000116
[OHGY] human gut metagenome; feces
504
421
-
Tyr
GTA
[ENA]
¢þ
>WENV182088585
OHGY01000806
[OHGY] human gut metagenome; feces
505
431
-
Arg
TCT
[ENA]
¢þ
>WENV182088581
OHGY01000529
[OHGY] human gut metagenome; feces
507
426
-
Leu
CAG
[ENA]
¢þ
>WENV182088572
OHGY01000158
[OHGY] human gut metagenome; feces
507
434
-
Pro
CGG
[ENA]
¢þ
>WENV182088565
OHGY01000040
[OHGY] human gut metagenome; feces
558
484
-
Asp
GTC
[ENA]
¢þ
>WENV182088574
OHGY01000258
[OHGY] human gut metagenome; feces
565
638
+
Trp
CCA
[ENA]
¢þ
>WENV182088571
OHGY01000158
[OHGY] human gut metagenome; feces
598
525
-
Phe
GAA
[ENA]
¢þ
>WENV182088568
OHGY01000116
[OHGY] human gut metagenome; feces
621
547
-
Thr
TGT
[ENA]
¢þ
>WENV182088567
OHGY01000051
[OHGY] human gut metagenome; feces
1360
1434
+
Glu
CTC
[ENA]
¢þ
>WENV182088562
OHGY01000014
[OHGY] human gut metagenome; feces
2181
2107
-
Ala
TGC
[ENA]
¢þ
>WENV182088561
OHGY01000014
[OHGY] human gut metagenome; feces
2272
2198
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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