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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHHF] human gut metagenome; feces
HIT:
14 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182091830
OHHF01000454
[OHHF] human gut metagenome; feces
141
67
-
Glu
CTC
[ENA]
¢þ
>WENV182091833
OHHF01000772
[OHHF] human gut metagenome; feces
173
246
+
Phe
GAA
[ENA]
¢þ
>WENV182091828
OHHF01000296
[OHHF] human gut metagenome; feces
212
124
-
Leu
TAA
[ENA]
¢þ
>WENV182091832
OHHF01000736
[OHHF] human gut metagenome; feces
250
174
-
Asp
GTC
[ENA]
¢þ
>WENV182091827
OHHF01000201
[OHHF] human gut metagenome; feces
316
402
+
Leu
CAG
[ENA]
¢þ
>WENV182091834
OHHF01000934
[OHHF] human gut metagenome; feces
365
436
+
Gln
CTG
[ENA]
¢þ
>WENV182091831
OHHF01000676
[OHHF] human gut metagenome; feces
382
454
+
Thr
CGT
[ENA]
¢þ
>WENV182091836
OHHF01001026
[OHHF] human gut metagenome; feces
424
353
-
Trp
CCA
[ENA]
¢þ
>WENV182091835
OHHF01000943
[OHHF] human gut metagenome; feces
428
346
-
Leu
CAG
[ENA]
¢þ
>WENV182091829
OHHF01000375
[OHHF] human gut metagenome; feces
631
559
-
Thr
TGT
[ENA]
¢þ
>WENV182091824
OHHF01000008
[OHHF] human gut metagenome; feces
736
662
-
Ala
TGC
[ENA]
¢þ
>WENV182091823
OHHF01000008
[OHHF] human gut metagenome; feces
892
815
-
Ile
GAT
[ENA]
¢þ
>WENV182091826
OHHF01000019
[OHHF] human gut metagenome; feces
1491
1415
-
Ile
GAT
[ENA]
¢þ
>WENV182091825
OHHF01000019
[OHHF] human gut metagenome; feces
1570
1495
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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