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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHHW] human gut metagenome; feces
HIT:
10 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182102756
OHHW01000055
[OHHW] human gut metagenome; feces
89
7
-
Leu
TAG
[ENA]
¢þ
>WENV182102760
OHHW01000232
[OHHW] human gut metagenome; feces
164
235
+
Gln
CTG
[ENA]
¢þ
>WENV182102755
OHHW01000055
[OHHW] human gut metagenome; feces
341
269
-
Arg
TCT
[ENA]
¢þ
>WENV182102757
OHHW01000058
[OHHW] human gut metagenome; feces
388
464
+
Ile
GAT
[ENA]
¢þ
>WENV182102754
OHHW01000055
[OHHW] human gut metagenome; feces
420
348
-
Gly
TCC
[ENA]
¢þ
>WENV182102761
OHHW01000321
[OHHW] human gut metagenome; feces
453
527
+
Asn
GTT
[ENA]
¢þ
>WENV182102758
OHHW01000058
[OHHW] human gut metagenome; feces
493
567
+
Ala
TGC
[ENA]
¢þ
>WENV182102753
OHHW01000055
[OHHW] human gut metagenome; feces
504
430
-
Ile
TAT
[ENA]
¢þ
>WENV182102759
OHHW01000183
[OHHW] human gut metagenome; feces
588
662
+
fMet
CAT
[ENA]
¢þ
>WENV182102752
OHHW01000055
[OHHW] human gut metagenome; feces
594
510
-
Leu
TAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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