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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHIP] human gut metagenome; feces
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182110130
OHIP01000307
[OHIP] human gut metagenome; feces
2
76
+
Arg
TCT
[ENA]
¢þ
>WENV182110134
OHIP01001234
[OHIP] human gut metagenome; feces
195
102
-
Ser
GCT
[ENA]
¢þ
>WENV182110126
OHIP01000131
[OHIP] human gut metagenome; feces
228
303
+
Ala
GGC
[ENA]
¢þ
>WENV182110133
OHIP01001234
[OHIP] human gut metagenome; feces
314
227
-
Ser
TGA
[ENA]
¢þ
>WENV182110125
OHIP01000027
[OHIP] human gut metagenome; feces
316
389
+
Lys
TTT
[ENA]
¢þ
>WENV182110137
OHIP01002013
[OHIP] human gut metagenome; feces
346
419
+
Gln
CTG
[ENA]
¢þ
>WENV182110132
OHIP01001199
[OHIP] human gut metagenome; feces
354
428
+
Asp
GTC
[ENA]
¢þ
>WENV182110135
OHIP01001261
[OHIP] human gut metagenome; feces
388
315
-
Thr
CGT
[ENA]
¢þ
>WENV182110136
OHIP01001625
[OHIP] human gut metagenome; feces
428
499
+
Gln
CTG
[ENA]
¢þ
>WENV182110127
OHIP01000142
[OHIP] human gut metagenome; feces
448
376
-
Glu
TTC
[ENA]
¢þ
>WENV182110128
OHIP01000197
[OHIP] human gut metagenome; feces
520
594
+
Thr
TGT
[ENA]
¢þ
>WENV182110131
OHIP01000723
[OHIP] human gut metagenome; feces
592
667
+
Val
GAC
[ENA]
¢þ
>WENV182110129
OHIP01000197
[OHIP] human gut metagenome; feces
668
751
+
Tyr
GTA
[ENA]
¢þ
>WENV182110124
OHIP01000013
[OHIP] human gut metagenome; feces
709
635
-
Ala
TGC
[ENA]
¢þ
>WENV182110123
OHIP01000013
[OHIP] human gut metagenome; feces
814
738
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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