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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OHIV] human gut metagenome; feces
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182112705
OHIV01000463
[OHIV] human gut metagenome; feces
81
155
+
Pro
TGG
[ENA]
¢þ
>WENV182112701
OHIV01000357
[OHIV] human gut metagenome; feces
88
163
+
His
GTG
[ENA]
¢þ
>WENV182112685
OHIV01000097
[OHIV] human gut metagenome; feces
105
176
+
Cys
GCA
[ENA]
¢þ
>WENV182112697
OHIV01000294
[OHIV] human gut metagenome; feces
147
60
-
Ser
GCT
[ENA]
¢þ
>WENV182112713
OHIV01001063
[OHIV] human gut metagenome; feces
148
223
+
Ala
TGC
[ENA]
¢þ
>WENV182112710
OHIV01000877
[OHIV] human gut metagenome; feces
158
83
-
Asn
GTT
[ENA]
¢þ
>WENV182112711
OHIV01000997
[OHIV] human gut metagenome; feces
160
234
+
Ile
GAT
[ENA]
¢þ
>WENV182112714
OHIV01001063
[OHIV] human gut metagenome; feces
228
304
+
Ile
GAT
[ENA]
¢þ
>WENV182112712
OHIV01000997
[OHIV] human gut metagenome; feces
251
325
+
Ala
TGC
[ENA]
¢þ
>WENV182112687
OHIV01000130
[OHIV] human gut metagenome; feces
441
514
+
Glu
TTC
[ENA]
¢þ
>WENV182112688
OHIV01000130
[OHIV] human gut metagenome; feces
524
595
+
Gln
TTG
[ENA]
¢þ
>WENV182112696
OHIV01000245
[OHIV] human gut metagenome; feces
538
611
+
Lys
CTT
[ENA]
¢þ
>WENV182112689
OHIV01000130
[OHIV] human gut metagenome; feces
625
710
+
Tyr
GTA
[ENA]
¢þ
>WENV182112709
OHIV01000703
[OHIV] human gut metagenome; feces
1005
930
-
Ala
TGC
[ENA]
¢þ
>WENV182112679
OHIV01000008
[OHIV] human gut metagenome; feces
1022
1095
+
fMet
CAT
[ENA]
¢þ
>WENV182112706
OHIV01000477
[OHIV] human gut metagenome; feces
1043
1115
+
fMet
CAT
[ENA]
¢þ
>WENV182112694
OHIV01000220
[OHIV] human gut metagenome; feces
1057
1142
+
Ser
TGA
[ENA]
¢þ
>WENV182112708
OHIV01000612
[OHIV] human gut metagenome; feces
1427
1501
+
Asn
GTT
[ENA]
¢þ
>WENV182112704
OHIV01000434
[OHIV] human gut metagenome; feces
1589
1516
-
Trp
CCA
[ENA]
¢þ
>WENV182112707
OHIV01000488
[OHIV] human gut metagenome; feces
1677
1764
+
Leu
TAA
[ENA]
¢þ
>WENV182112683
OHIV01000073
[OHIV] human gut metagenome; feces
1798
1725
-
Lys
TTT
[ENA]
¢þ
>WENV182112698
OHIV01000309
[OHIV] human gut metagenome; feces
2486
2560
+
Thr
TGT
[ENA]
¢þ
>WENV182112699
OHIV01000309
[OHIV] human gut metagenome; feces
2577
2659
+
Tyr
GTA
[ENA]
¢þ
>WENV182112703
OHIV01000398
[OHIV] human gut metagenome; feces
2594
2521
-
Phe
GAA
[ENA]
¢þ
>WENV182112700
OHIV01000322
[OHIV] human gut metagenome; feces
2695
2620
-
Arg
TCT
[ENA]
¢þ
>WENV182112702
OHIV01000398
[OHIV] human gut metagenome; feces
2750
2825
+
Pro
CGG
[ENA]
¢þ
>WENV182112690
OHIV01000169
[OHIV] human gut metagenome; feces
2975
3049
+
Asp
GTC
[ENA]
¢þ
>WENV182112686
OHIV01000099
[OHIV] human gut metagenome; feces
3435
3507
+
Arg
CCT
[ENA]
¢þ
>WENV182112695
OHIV01000224
[OHIV] human gut metagenome; feces
3651
3739
+
Ser
GGA
[ENA]
¢þ
>WENV182112692
OHIV01000197
[OHIV] human gut metagenome; feces
4666
4740
+
Arg
CCT
[ENA]
¢þ
>WENV182112691
OHIV01000183
[OHIV] human gut metagenome; feces
5421
5338
-
Leu
TAG
[ENA]
¢þ
>WENV182112693
OHIV01000198
[OHIV] human gut metagenome; feces
5933
5849
-
Leu
CAA
[ENA]
¢þ
>WENV182112681
OHIV01000055
[OHIV] human gut metagenome; feces
6087
6160
+
Thr
CGT
[ENA]
¢þ
>WENV182112682
OHIV01000055
[OHIV] human gut metagenome; feces
6192
6263
+
Gly
CCC
[ENA]
¢þ
>WENV182112684
OHIV01000091
[OHIV] human gut metagenome; feces
7245
7319
+
Ile2
CAT
[ENA]
¢þ
>WENV182112680
OHIV01000042
[OHIV] human gut metagenome; feces
12258
12329
+
Gln
TTG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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