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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OHJW] human gut metagenome; feces
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182127636
OHJW01001487
[OHJW] human gut metagenome; feces
96
170
+
His
GTG
[ENA]
¢þ
>WENV182127628
OHJW01000477
[OHJW] human gut metagenome; feces
131
58
-
Pro
CGG
[ENA]
¢þ
>WENV182127635
OHJW01001175
[OHJW] human gut metagenome; feces
153
80
-
fMet
CAT
[ENA]
¢þ
>WENV182127634
OHJW01001127
[OHJW] human gut metagenome; feces
156
83
-
Lys
TTT
[ENA]
¢þ
>WENV182127629
OHJW01000609
[OHJW] human gut metagenome; feces
167
255
+
Ser
GGA
[ENA]
¢þ
>WENV182127631
OHJW01000932
[OHJW] human gut metagenome; feces
215
299
+
Leu
CAA
[ENA]
¢þ
>WENV182127627
OHJW01000477
[OHJW] human gut metagenome; feces
216
143
-
Phe
GAA
[ENA]
¢þ
>WENV182127620
OHJW01000078
[OHJW] human gut metagenome; feces
216
291
+
Phe
GAA
[ENA]
¢þ
>WENV182127617
OHJW01000028
[OHJW] human gut metagenome; feces
287
213
-
Ala
TGC
[ENA]
¢þ
>WENV182127625
OHJW01000331
[OHJW] human gut metagenome; feces
294
209
-
Ser
TGA
[ENA]
¢þ
>WENV182127633
OHJW01001004
[OHJW] human gut metagenome; feces
321
247
-
Met
CAT
[ENA]
¢þ
>WENV182127621
OHJW01000078
[OHJW] human gut metagenome; feces
325
400
+
Gly
GCC
[ENA]
¢þ
>WENV182127626
OHJW01000370
[OHJW] human gut metagenome; feces
327
241
-
Leu
CAG
[ENA]
¢þ
>WENV182127613
OHJW01000017
[OHJW] human gut metagenome; feces
340
413
+
Gly
GCC
[ENA]
¢þ
>WENV182127638
OHJW01002137
[OHJW] human gut metagenome; feces
342
413
+
Gly
GCC
[ENA]
¢þ
>WENV182127637
OHJW01002119
[OHJW] human gut metagenome; feces
354
426
+
Cys
GCA
[ENA]
¢þ
>WENV182127616
OHJW01000028
[OHJW] human gut metagenome; feces
392
316
-
Ile
GAT
[ENA]
¢þ
>WENV182127614
OHJW01000017
[OHJW] human gut metagenome; feces
429
513
+
Leu
TAA
[ENA]
¢þ
>WENV182127632
OHJW01000939
[OHJW] human gut metagenome; feces
470
395
-
Val
TAC
[ENA]
¢þ
>WENV182127622
OHJW01000078
[OHJW] human gut metagenome; feces
514
590
+
Met
CAT
[ENA]
¢þ
>WENV182127630
OHJW01000920
[OHJW] human gut metagenome; feces
544
618
+
Ile2
CAT
[ENA]
¢þ
>WENV182127623
OHJW01000078
[OHJW] human gut metagenome; feces
683
757
+
Glu
TTC
[ENA]
¢þ
>WENV182127624
OHJW01000116
[OHJW] human gut metagenome; feces
962
1035
+
Gly
CCC
[ENA]
¢þ
>WENV182127619
OHJW01000072
[OHJW] human gut metagenome; feces
993
918
-
Ala
TGC
[ENA]
¢þ
>WENV182127618
OHJW01000072
[OHJW] human gut metagenome; feces
1073
998
-
Ile
GAT
[ENA]
¢þ
>WENV182127615
OHJW01000027
[OHJW] human gut metagenome; feces
1291
1209
-
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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