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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHKR] human gut metagenome; feces
HIT:
76 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182140660
OHKR01000669
[OHKR] human gut metagenome; feces
60
132
+
Val
TAC
[ENA]
¢þ
>WENV182140700
OHKR01002333
[OHKR] human gut metagenome; feces
75
1
-
Lys
CTT
[ENA]
¢þ
>WENV182140695
OHKR01001592
[OHKR] human gut metagenome; feces
79
153
+
Thr
TGT
[ENA]
¢þ
>WENV182140693
OHKR01001567
[OHKR] human gut metagenome; feces
89
162
+
Cys
GCA
[ENA]
¢þ
>WENV182140661
OHKR01000669
[OHKR] human gut metagenome; feces
155
227
+
Asp
GTC
[ENA]
¢þ
>WENV182140696
OHKR01001592
[OHKR] human gut metagenome; feces
156
243
+
Tyr
GTA
[ENA]
¢þ
>WENV182140690
OHKR01001506
[OHKR] human gut metagenome; feces
170
94
-
Arg
TCT
[ENA]
¢þ
>WENV182140694
OHKR01001567
[OHKR] human gut metagenome; feces
175
261
+
Leu
TAA
[ENA]
¢þ
>WENV182140699
OHKR01002333
[OHKR] human gut metagenome; feces
176
101
-
Lys
TTT
[ENA]
¢þ
>WENV182140662
OHKR01000669
[OHKR] human gut metagenome; feces
231
303
+
Lys
TTT
[ENA]
¢þ
>WENV182140663
OHKR01000669
[OHKR] human gut metagenome; feces
312
395
+
Leu
TAG
[ENA]
¢þ
>WENV182140689
OHKR01001506
[OHKR] human gut metagenome; feces
346
271
-
Ile2
CAT
[ENA]
¢þ
>WENV182140697
OHKR01001592
[OHKR] human gut metagenome; feces
348
422
+
Thr
GGT
[ENA]
¢þ
>WENV182140648
OHKR01000238
[OHKR] human gut metagenome; feces
354
428
+
Arg
CCT
[ENA]
¢þ
>WENV182140684
OHKR01001145
[OHKR] human gut metagenome; feces
375
450
+
Thr
TGT
[ENA]
¢þ
>WENV182140664
OHKR01000669
[OHKR] human gut metagenome; feces
410
482
+
Thr
TGT
[ENA]
¢þ
>WENV182140691
OHKR01001538
[OHKR] human gut metagenome; feces
427
503
+
Val
GAC
[ENA]
¢þ
>WENV182140701
OHKR01002354
[OHKR] human gut metagenome; feces
428
503
+
Glu
CTC
[ENA]
¢þ
>WENV182140688
OHKR01001322
[OHKR] human gut metagenome; feces
453
528
+
Ile2
CAT
[ENA]
¢þ
>WENV182140681
OHKR01000915
[OHKR] human gut metagenome; feces
463
538
+
Gly
GCC
[ENA]
¢þ
>WENV182140665
OHKR01000669
[OHKR] human gut metagenome; feces
498
569
+
Gly
GCC
[ENA]
¢þ
>WENV182140698
OHKR01002076
[OHKR] human gut metagenome; feces
534
460
-
Arg
CCG
[ENA]
¢þ
>WENV182140666
OHKR01000669
[OHKR] human gut metagenome; feces
577
662
+
Leu
TAA
[ENA]
¢þ
>WENV182140679
OHKR01000717
[OHKR] human gut metagenome; feces
623
548
-
Asn
GTT
[ENA]
¢þ
>WENV182140667
OHKR01000669
[OHKR] human gut metagenome; feces
679
754
+
Arg
ACG
[ENA]
¢þ
>WENV182140668
OHKR01000669
[OHKR] human gut metagenome; feces
758
833
+
Pro
TGG
[ENA]
¢þ
>WENV182140683
OHKR01001069
[OHKR] human gut metagenome; feces
788
717
-
Arg
CCG
[ENA]
¢þ
>WENV182140669
OHKR01000669
[OHKR] human gut metagenome; feces
837
912
+
Met
CAT
[ENA]
¢þ
>WENV182140686
OHKR01001250
[OHKR] human gut metagenome; feces
848
922
+
Gln
TTG
[ENA]
¢þ
>WENV182140659
OHKR01000568
[OHKR] human gut metagenome; feces
865
940
+
Glu
TTC
[ENA]
¢þ
>WENV182140670
OHKR01000669
[OHKR] human gut metagenome; feces
932
1007
+
Ile2
CAT
[ENA]
¢þ
>WENV182140692
OHKR01001544
[OHKR] human gut metagenome; feces
1011
935
-
Pro
TGG
[ENA]
¢þ
>WENV182140671
OHKR01000669
[OHKR] human gut metagenome; feces
1030
1119
+
Ser
TGA
[ENA]
¢þ
>WENV182140672
OHKR01000669
[OHKR] human gut metagenome; feces
1133
1206
+
fMet
CAT
[ENA]
¢þ
>WENV182140682
OHKR01000943
[OHKR] human gut metagenome; feces
1147
1220
+
Gly
TCC
[ENA]
¢þ
>WENV182140655
OHKR01000539
[OHKR] human gut metagenome; feces
1158
1083
-
Phe
GAA
[ENA]
¢þ
>WENV182140673
OHKR01000669
[OHKR] human gut metagenome; feces
1212
1284
+
Phe
GAA
[ENA]
¢þ
>WENV182140687
OHKR01001300
[OHKR] human gut metagenome; feces
1276
1200
-
Pro
GGG
[ENA]
¢þ
>WENV182140674
OHKR01000669
[OHKR] human gut metagenome; feces
1304
1374
+
Gly
TCC
[ENA]
¢þ
>WENV182140675
OHKR01000669
[OHKR] human gut metagenome; feces
1404
1479
+
Ile
GAT
[ENA]
¢þ
>WENV182140685
OHKR01001237
[OHKR] human gut metagenome; feces
1437
1362
-
Trp
CCA
[ENA]
¢þ
>WENV182140676
OHKR01000669
[OHKR] human gut metagenome; feces
1488
1577
+
Ser
GCT
[ENA]
¢þ
>WENV182140678
OHKR01000717
[OHKR] human gut metagenome; feces
1615
1704
+
Ser
CGA
[ENA]
¢þ
>WENV182140677
OHKR01000672
[OHKR] human gut metagenome; feces
1783
1707
-
Arg
TCT
[ENA]
¢þ
>WENV182140680
OHKR01000905
[OHKR] human gut metagenome; feces
1898
1823
-
Arg
CCT
[ENA]
¢þ
>WENV182140644
OHKR01000160
[OHKR] human gut metagenome; feces
2209
2284
+
Lys
TTT
[ENA]
¢þ
>WENV182140653
OHKR01000338
[OHKR] human gut metagenome; feces
2481
2406
-
Thr
CGT
[ENA]
¢þ
>WENV182140645
OHKR01000204
[OHKR] human gut metagenome; feces
2588
2672
+
Leu
CAA
[ENA]
¢þ
>WENV182140656
OHKR01000557
[OHKR] human gut metagenome; feces
2876
2956
+
Tyr
GTA
[ENA]
¢þ
>WENV182140657
OHKR01000557
[OHKR] human gut metagenome; feces
2960
3032
+
Trp
CCA
[ENA]
¢þ
>WENV182140658
OHKR01000557
[OHKR] human gut metagenome; feces
3042
3116
+
His
GTG
[ENA]
¢þ
>WENV182140654
OHKR01000490
[OHKR] human gut metagenome; feces
3148
3075
-
Gly
CCC
[ENA]
¢þ
>WENV182140647
OHKR01000208
[OHKR] human gut metagenome; feces
3193
3118
-
Trp
CCA
[ENA]
¢þ
>WENV182140646
OHKR01000208
[OHKR] human gut metagenome; feces
3278
3202
-
Asp
GTC
[ENA]
¢þ
>WENV182140643
OHKR01000131
[OHKR] human gut metagenome; feces
3385
3309
-
Arg
ACG
[ENA]
¢þ
>WENV182140642
OHKR01000131
[OHKR] human gut metagenome; feces
3481
3389
-
Ser
GCT
[ENA]
¢þ
>WENV182140631
OHKR01000021
[OHKR] human gut metagenome; feces
3873
3959
+
Leu
GAG
[ENA]
¢þ
>WENV182140652
OHKR01000316
[OHKR] human gut metagenome; feces
4336
4412
+
Arg
TCT
[ENA]
¢þ
>WENV182140651
OHKR01000293
[OHKR] human gut metagenome; feces
4809
4735
-
Ala
TGC
[ENA]
¢þ
>WENV182140650
OHKR01000248
[OHKR] human gut metagenome; feces
4991
4916
-
Ala
GGC
[ENA]
¢þ
>WENV182140649
OHKR01000242
[OHKR] human gut metagenome; feces
5122
5050
-
Thr
CGT
[ENA]
¢þ
>WENV182140636
OHKR01000062
[OHKR] human gut metagenome; feces
5481
5575
+
SeC
TCA
[ENA]
¢þ
>WENV182140629
OHKR01000009
[OHKR] human gut metagenome; feces
6985
6914
-
Arg
CCT
[ENA]
¢þ
>WENV182140632
OHKR01000021
[OHKR] human gut metagenome; feces
7742
7818
+
fMet
CAT
[ENA]
¢þ
>WENV182140641
OHKR01000115
[OHKR] human gut metagenome; feces
8051
7976
-
Thr
GGT
[ENA]
¢þ
>WENV182140628
OHKR01000007
[OHKR] human gut metagenome; feces
8056
8126
+
Cys
GCA
[ENA]
¢þ
>WENV182140640
OHKR01000115
[OHKR] human gut metagenome; feces
8132
8058
-
Gly
TCC
[ENA]
¢þ
>WENV182140639
OHKR01000115
[OHKR] human gut metagenome; feces
8333
8249
-
Tyr
GTA
[ENA]
¢þ
>WENV182140638
OHKR01000115
[OHKR] human gut metagenome; feces
8417
8342
-
Thr
TGT
[ENA]
¢þ
>WENV182140626
OHKR01000001
[OHKR] human gut metagenome; feces
9004
8916
-
Ser
CGA
[ENA]
¢þ
>WENV182140637
OHKR01000065
[OHKR] human gut metagenome; feces
9333
9263
-
Thr
GGT
[ENA]
¢þ
>WENV182140635
OHKR01000030
[OHKR] human gut metagenome; feces
18136
18061
-
Arg
TCT
[ENA]
¢þ
>WENV182140633
OHKR01000027
[OHKR] human gut metagenome; feces
18475
18391
-
Ser
GGA
[ENA]
¢þ
>WENV182140634
OHKR01000030
[OHKR] human gut metagenome; feces
18932
19006
+
Glu
TTC
[ENA]
¢þ
>WENV182140630
OHKR01000020
[OHKR] human gut metagenome; feces
25644
25571
-
Lys
CTT
[ENA]
¢þ
>WENV182140627
OHKR01000002
[OHKR] human gut metagenome; feces
51365
51292
-
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK