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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
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HOW TO USE
tRNA gene List
[OHLG] human gut metagenome; feces
HIT:
77 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182149134
OHLG01000270
[OHLG] human gut metagenome; feces
1
75
+
Glu
TTC
[ENA]
¢þ
>WENV182149158
OHLG01001135
[OHLG] human gut metagenome; feces
60
132
+
Val
TAC
[ENA]
¢þ
>WENV182149177
OHLG01001791
[OHLG] human gut metagenome; feces
78
152
+
Arg
CCT
[ENA]
¢þ
>WENV182149180
OHLG01001984
[OHLG] human gut metagenome; feces
131
58
-
Gln
TTG
[ENA]
¢þ
>WENV182149159
OHLG01001135
[OHLG] human gut metagenome; feces
155
227
+
Asp
GTC
[ENA]
¢þ
>WENV182149117
OHLG01000117
[OHLG] human gut metagenome; feces
166
86
-
Tyr
GTA
[ENA]
¢þ
>WENV182149160
OHLG01001135
[OHLG] human gut metagenome; feces
231
303
+
Lys
TTT
[ENA]
¢þ
>WENV182149161
OHLG01001135
[OHLG] human gut metagenome; feces
312
395
+
Leu
TAG
[ENA]
¢þ
>WENV182149162
OHLG01001135
[OHLG] human gut metagenome; feces
410
482
+
Thr
TGT
[ENA]
¢þ
>WENV182149141
OHLG01000480
[OHLG] human gut metagenome; feces
430
517
+
Ser
TGA
[ENA]
¢þ
>WENV182149183
OHLG01002410
[OHLG] human gut metagenome; feces
440
366
-
Thr
GGT
[ENA]
¢þ
>WENV182149178
OHLG01001930
[OHLG] human gut metagenome; feces
448
523
+
Gly
GCC
[ENA]
¢þ
>WENV182149116
OHLG01000099
[OHLG] human gut metagenome; feces
457
382
-
Phe
GAA
[ENA]
¢þ
>WENV182149140
OHLG01000434
[OHLG] human gut metagenome; feces
483
559
+
Arg
TCT
[ENA]
¢þ
>WENV182149163
OHLG01001135
[OHLG] human gut metagenome; feces
498
569
+
Gly
GCC
[ENA]
¢þ
>WENV182149182
OHLG01002306
[OHLG] human gut metagenome; feces
554
468
-
Leu
CAG
[ENA]
¢þ
>WENV182149164
OHLG01001135
[OHLG] human gut metagenome; feces
577
662
+
Leu
TAA
[ENA]
¢þ
>WENV182149179
OHLG01001952
[OHLG] human gut metagenome; feces
619
694
+
Lys
TTT
[ENA]
¢þ
>WENV182149181
OHLG01002070
[OHLG] human gut metagenome; feces
632
708
+
Pro
CGG
[ENA]
¢þ
>WENV182149165
OHLG01001135
[OHLG] human gut metagenome; feces
679
754
+
Arg
ACG
[ENA]
¢þ
>WENV182149174
OHLG01001209
[OHLG] human gut metagenome; feces
684
609
-
Glu
TTC
[ENA]
¢þ
>WENV182149155
OHLG01000833
[OHLG] human gut metagenome; feces
723
649
-
Arg
CCG
[ENA]
¢þ
>WENV182149123
OHLG01000161
[OHLG] human gut metagenome; feces
725
811
+
Leu
GAG
[ENA]
¢þ
>WENV182149157
OHLG01000922
[OHLG] human gut metagenome; feces
743
670
-
Gly
TCC
[ENA]
¢þ
>WENV182149166
OHLG01001135
[OHLG] human gut metagenome; feces
758
833
+
Pro
TGG
[ENA]
¢þ
>WENV182149150
OHLG01000605
[OHLG] human gut metagenome; feces
808
881
+
Gly
CCC
[ENA]
¢þ
>WENV182149137
OHLG01000330
[OHLG] human gut metagenome; feces
830
906
+
Asp
GTC
[ENA]
¢þ
>WENV182149167
OHLG01001135
[OHLG] human gut metagenome; feces
837
912
+
Met
CAT
[ENA]
¢þ
>WENV182149112
OHLG01000035
[OHLG] human gut metagenome; feces
851
926
+
Arg
TCT
[ENA]
¢þ
>WENV182149176
OHLG01001621
[OHLG] human gut metagenome; feces
909
984
+
Asn
GTT
[ENA]
¢þ
>WENV182149138
OHLG01000330
[OHLG] human gut metagenome; feces
915
990
+
Trp
CCA
[ENA]
¢þ
>WENV182149168
OHLG01001135
[OHLG] human gut metagenome; feces
932
1007
+
Ile2
CAT
[ENA]
¢þ
>WENV182149175
OHLG01001212
[OHLG] human gut metagenome; feces
939
863
-
Pro
GGG
[ENA]
¢þ
>WENV182149169
OHLG01001135
[OHLG] human gut metagenome; feces
1030
1119
+
Ser
TGA
[ENA]
¢þ
>WENV182149139
OHLG01000381
[OHLG] human gut metagenome; feces
1103
1178
+
Lys
TTT
[ENA]
¢þ
>WENV182149170
OHLG01001135
[OHLG] human gut metagenome; feces
1133
1206
+
fMet
CAT
[ENA]
¢þ
>WENV182149171
OHLG01001135
[OHLG] human gut metagenome; feces
1212
1284
+
Phe
GAA
[ENA]
¢þ
>WENV182149172
OHLG01001135
[OHLG] human gut metagenome; feces
1304
1374
+
Gly
TCC
[ENA]
¢þ
>WENV182149173
OHLG01001135
[OHLG] human gut metagenome; feces
1404
1479
+
Ile
GAT
[ENA]
¢þ
>WENV182149156
OHLG01000853
[OHLG] human gut metagenome; feces
1713
1789
+
Pro
CGG
[ENA]
¢þ
>WENV182149130
OHLG01000216
[OHLG] human gut metagenome; feces
1757
1833
+
Arg
CCG
[ENA]
¢þ
>WENV182149131
OHLG01000216
[OHLG] human gut metagenome; feces
1892
1967
+
His
GTG
[ENA]
¢þ
>WENV182149148
OHLG01000562
[OHLG] human gut metagenome; feces
1908
1984
+
Met
CAT
[ENA]
¢þ
>WENV182149132
OHLG01000216
[OHLG] human gut metagenome; feces
1988
2074
+
Leu
CAG
[ENA]
¢þ
>WENV182149149
OHLG01000562
[OHLG] human gut metagenome; feces
2032
2106
+
Gln
CTG
[ENA]
¢þ
>WENV182149154
OHLG01000648
[OHLG] human gut metagenome; feces
2166
2092
-
Ala
TGC
[ENA]
¢þ
>WENV182149151
OHLG01000612
[OHLG] human gut metagenome; feces
2170
2245
+
Gly
GCC
[ENA]
¢þ
>WENV182149147
OHLG01000535
[OHLG] human gut metagenome; feces
2220
2145
-
Ala
TGC
[ENA]
¢þ
>WENV182149145
OHLG01000504
[OHLG] human gut metagenome; feces
2275
2200
-
Thr
CGT
[ENA]
¢þ
>WENV182149152
OHLG01000612
[OHLG] human gut metagenome; feces
2300
2373
+
Cys
GCA
[ENA]
¢þ
>WENV182149146
OHLG01000535
[OHLG] human gut metagenome; feces
2339
2263
-
Ile
GAT
[ENA]
¢þ
>WENV182149153
OHLG01000612
[OHLG] human gut metagenome; feces
2386
2472
+
Leu
TAA
[ENA]
¢þ
>WENV182149142
OHLG01000498
[OHLG] human gut metagenome; feces
2559
2634
+
Ile2
CAT
[ENA]
¢þ
>WENV182149143
OHLG01000498
[OHLG] human gut metagenome; feces
2642
2718
+
Arg
TCG
[ENA]
¢þ
>WENV182149144
OHLG01000498
[OHLG] human gut metagenome; feces
2732
2806
+
Arg
TCT
[ENA]
¢þ
>WENV182149129
OHLG01000211
[OHLG] human gut metagenome; feces
3036
2952
-
Leu
CAA
[ENA]
¢þ
>WENV182149136
OHLG01000285
[OHLG] human gut metagenome; feces
4143
4070
-
Asn
GTT
[ENA]
¢þ
>WENV182149124
OHLG01000161
[OHLG] human gut metagenome; feces
4594
4670
+
fMet
CAT
[ENA]
¢þ
>WENV182149118
OHLG01000119
[OHLG] human gut metagenome; feces
4632
4557
-
Ile2
CAT
[ENA]
¢þ
>WENV182149119
OHLG01000153
[OHLG] human gut metagenome; feces
4841
4916
+
Thr
TGT
[ENA]
¢þ
>WENV182149133
OHLG01000222
[OHLG] human gut metagenome; feces
4924
4853
-
Arg
CCG
[ENA]
¢þ
>WENV182149120
OHLG01000153
[OHLG] human gut metagenome; feces
4925
5009
+
Tyr
GTA
[ENA]
¢þ
>WENV182149121
OHLG01000153
[OHLG] human gut metagenome; feces
5126
5200
+
Gly
TCC
[ENA]
¢þ
>WENV182149135
OHLG01000283
[OHLG] human gut metagenome; feces
5156
5240
+
Ser
GGA
[ENA]
¢þ
>WENV182149128
OHLG01000210
[OHLG] human gut metagenome; feces
5192
5116
-
Arg
ACG
[ENA]
¢þ
>WENV182149122
OHLG01000153
[OHLG] human gut metagenome; feces
5207
5282
+
Thr
GGT
[ENA]
¢þ
>WENV182149127
OHLG01000210
[OHLG] human gut metagenome; feces
5288
5196
-
Ser
GCT
[ENA]
¢þ
>WENV182149115
OHLG01000067
[OHLG] human gut metagenome; feces
5370
5440
+
Thr
GGT
[ENA]
¢þ
>WENV182149125
OHLG01000194
[OHLG] human gut metagenome; feces
6161
6236
+
Ile2
CAT
[ENA]
¢þ
>WENV182149114
OHLG01000063
[OHLG] human gut metagenome; feces
6172
6243
+
Arg
CCT
[ENA]
¢þ
>WENV182149126
OHLG01000206
[OHLG] human gut metagenome; feces
6617
6541
-
Arg
TCT
[ENA]
¢þ
>WENV182149113
OHLG01000049
[OHLG] human gut metagenome; feces
10558
10464
-
SeC
TCA
[ENA]
¢þ
>WENV182149110
OHLG01000026
[OHLG] human gut metagenome; feces
18024
18109
+
Leu
AAG
[ENA]
¢þ
>WENV182149111
OHLG01000026
[OHLG] human gut metagenome; feces
19302
19374
+
Thr
CGT
[ENA]
¢þ
>WENV182149109
OHLG01000013
[OHLG] human gut metagenome; feces
27522
27449
-
Lys
CTT
[ENA]
¢þ
>WENV182149107
OHLG01000002
[OHLG] human gut metagenome; feces
45217
45287
+
Cys
GCA
[ENA]
¢þ
>WENV182149108
OHLG01000003
[OHLG] human gut metagenome; feces
69815
69903
+
Ser
CGA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
BACK