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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHMB] human gut metagenome; feces
HIT:
12 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182159604
OHMB01000614
[OHMB] human gut metagenome; feces
98
27
-
Gln
TTG
[ENA]
¢þ
>WENV182159599
OHMB01000388
[OHMB] human gut metagenome; feces
205
279
+
Thr
TGT
[ENA]
¢þ
>WENV182159598
OHMB01000215
[OHMB] human gut metagenome; feces
241
312
+
Ile
GAT
[ENA]
¢þ
>WENV182159605
OHMB01000646
[OHMB] human gut metagenome; feces
291
215
-
Ile
GAT
[ENA]
¢þ
>WENV182159600
OHMB01000388
[OHMB] human gut metagenome; feces
297
381
+
Tyr
GTA
[ENA]
¢þ
>WENV182159595
OHMB01000023
[OHMB] human gut metagenome; feces
380
308
-
Thr
TGT
[ENA]
¢þ
>WENV182159602
OHMB01000520
[OHMB] human gut metagenome; feces
453
378
-
Asn
GTT
[ENA]
¢þ
>WENV182159594
OHMB01000023
[OHMB] human gut metagenome; feces
471
399
-
Val
TAC
[ENA]
¢þ
>WENV182159603
OHMB01000539
[OHMB] human gut metagenome; feces
472
397
-
Ala
TGC
[ENA]
¢þ
>WENV182159601
OHMB01000398
[OHMB] human gut metagenome; feces
499
423
-
Arg
ACG
[ENA]
¢þ
>WENV182159597
OHMB01000028
[OHMB] human gut metagenome; feces
1926
1852
-
Ala
TGC
[ENA]
¢þ
>WENV182159596
OHMB01000028
[OHMB] human gut metagenome; feces
2015
1941
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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