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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OHMC] human gut metagenome; feces
HIT:
22 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182159613
OHMC01000317
[OHMC] human gut metagenome; feces
50
126
+
Met
CAT
[ENA]
¢þ
>WENV182159622
OHMC01001186
[OHMC] human gut metagenome; feces
94
168
+
Glu
CTC
[ENA]
¢þ
>WENV182159620
OHMC01000875
[OHMC] human gut metagenome; feces
163
237
+
Gly
TCC
[ENA]
¢þ
>WENV182159623
OHMC01001186
[OHMC] human gut metagenome; feces
210
286
+
Asn
GTT
[ENA]
¢þ
>WENV182159614
OHMC01000317
[OHMC] human gut metagenome; feces
218
289
+
Glu
TTC
[ENA]
¢þ
>WENV182159627
OHMC01001366
[OHMC] human gut metagenome; feces
221
146
-
Pro
TGG
[ENA]
¢þ
>WENV182159625
OHMC01001228
[OHMC] human gut metagenome; feces
274
189
-
Leu
TAA
[ENA]
¢þ
>WENV182159626
OHMC01001366
[OHMC] human gut metagenome; feces
329
256
-
Gln
CTG
[ENA]
¢þ
>WENV182159609
OHMC01000255
[OHMC] human gut metagenome; feces
334
409
+
Phe
GAA
[ENA]
¢þ
>WENV182159621
OHMC01001117
[OHMC] human gut metagenome; feces
345
427
+
Leu
TAG
[ENA]
¢þ
>WENV182159624
OHMC01001228
[OHMC] human gut metagenome; feces
362
289
-
Gly
GCC
[ENA]
¢þ
>WENV182159617
OHMC01000486
[OHMC] human gut metagenome; feces
391
478
+
Ser
TGA
[ENA]
¢þ
>WENV182159610
OHMC01000255
[OHMC] human gut metagenome; feces
440
515
+
Gly
GCC
[ENA]
¢þ
>WENV182159619
OHMC01000527
[OHMC] human gut metagenome; feces
506
431
-
Val
TAC
[ENA]
¢þ
>WENV182159618
OHMC01000486
[OHMC] human gut metagenome; feces
513
606
+
Ser
GCT
[ENA]
¢þ
>WENV182159611
OHMC01000255
[OHMC] human gut metagenome; feces
522
597
+
Val
TAC
[ENA]
¢þ
>WENV182159616
OHMC01000369
[OHMC] human gut metagenome; feces
549
477
-
Thr
GGT
[ENA]
¢þ
>WENV182159612
OHMC01000255
[OHMC] human gut metagenome; feces
601
675
+
Ile2
CAT
[ENA]
¢þ
>WENV182159608
OHMC01000221
[OHMC] human gut metagenome; feces
644
560
-
Leu
CAA
[ENA]
¢þ
>WENV182159615
OHMC01000369
[OHMC] human gut metagenome; feces
648
565
-
Tyr
GTA
[ENA]
¢þ
>WENV182159607
OHMC01000209
[OHMC] human gut metagenome; feces
900
815
-
Ser
TGA
[ENA]
¢þ
>WENV182159606
OHMC01000090
[OHMC] human gut metagenome; feces
1523
1447
-
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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