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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OHML] human gut metagenome; feces
HIT:
51 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182164126
OHML01001594
[OHML] human gut metagenome; feces
68
143
+
Ile2
CAT
[ENA]
¢þ
>WENV182164124
OHML01001384
[OHML] human gut metagenome; feces
79
6
-
Gly
CCC
[ENA]
¢þ
>WENV182164131
OHML01002560
[OHML] human gut metagenome; feces
101
177
+
Asp
GTC
[ENA]
¢þ
>WENV182164144
OHML01004437
[OHML] human gut metagenome; feces
128
213
+
Leu
AAG
[ENA]
¢þ
>WENV182164141
OHML01003919
[OHML] human gut metagenome; feces
130
55
-
Phe
GAA
[ENA]
¢þ
>WENV182164142
OHML01003999
[OHML] human gut metagenome; feces
133
58
-
Thr
TGT
[ENA]
¢þ
>WENV182164155
OHML01006164
[OHML] human gut metagenome; feces
135
63
-
Arg
CCT
[ENA]
¢þ
>WENV182164151
OHML01005070
[OHML] human gut metagenome; feces
142
70
-
Thr
GGT
[ENA]
¢þ
>WENV182164147
OHML01004609
[OHML] human gut metagenome; feces
183
107
-
Arg
TCT
[ENA]
¢þ
>WENV182164132
OHML01002560
[OHML] human gut metagenome; feces
186
261
+
Trp
CCA
[ENA]
¢þ
>WENV182164152
OHML01006044
[OHML] human gut metagenome; feces
235
311
+
Met
CAT
[ENA]
¢þ
>WENV182164146
OHML01004609
[OHML] human gut metagenome; feces
264
189
-
Thr
TGT
[ENA]
¢þ
>WENV182164125
OHML01001499
[OHML] human gut metagenome; feces
271
182
-
Ser
CGA
[ENA]
¢þ
>WENV182164114
OHML01000590
[OHML] human gut metagenome; feces
276
201
-
Lys
TTT
[ENA]
¢þ
>WENV182164140
OHML01003919
[OHML] human gut metagenome; feces
311
384
+
Pro
CGG
[ENA]
¢þ
>WENV182164136
OHML01003169
[OHML] human gut metagenome; feces
334
241
-
Ser
GCT
[ENA]
¢þ
>WENV182164150
OHML01005070
[OHML] human gut metagenome; feces
340
257
-
Tyr
GTA
[ENA]
¢þ
>WENV182164137
OHML01003256
[OHML] human gut metagenome; feces
367
280
-
Ser
GGA
[ENA]
¢þ
>WENV182164123
OHML01001189
[OHML] human gut metagenome; feces
377
463
+
Leu
CAG
[ENA]
¢þ
>WENV182164154
OHML01006045
[OHML] human gut metagenome; feces
382
306
-
fMet
CAT
[ENA]
¢þ
>WENV182164153
OHML01006044
[OHML] human gut metagenome; feces
403
477
+
Glu
TTC
[ENA]
¢þ
>WENV182164135
OHML01003169
[OHML] human gut metagenome; feces
455
368
-
Ser
TGA
[ENA]
¢þ
>WENV182164149
OHML01005070
[OHML] human gut metagenome; feces
457
383
-
Thr
TGT
[ENA]
¢þ
>WENV182164145
OHML01004528
[OHML] human gut metagenome; feces
458
531
+
Trp
CCA
[ENA]
¢þ
>WENV182164143
OHML01004365
[OHML] human gut metagenome; feces
465
380
-
Tyr
GTA
[ENA]
¢þ
>WENV182164119
OHML01000897
[OHML] human gut metagenome; feces
474
550
+
Arg
TCT
[ENA]
¢þ
>WENV182164121
OHML01001066
[OHML] human gut metagenome; feces
480
405
-
Phe
GAA
[ENA]
¢þ
>WENV182164148
OHML01004965
[OHML] human gut metagenome; feces
482
558
+
fMet
CAT
[ENA]
¢þ
>WENV182164139
OHML01003817
[OHML] human gut metagenome; feces
493
572
+
Leu
CAA
[ENA]
¢þ
>WENV182164138
OHML01003658
[OHML] human gut metagenome; feces
546
621
+
Gly
GCC
[ENA]
¢þ
>WENV182164134
OHML01002707
[OHML] human gut metagenome; feces
782
706
-
Asn
GTT
[ENA]
¢þ
>WENV182164133
OHML01002615
[OHML] human gut metagenome; feces
793
719
-
Ala
TGC
[ENA]
¢þ
>WENV182164130
OHML01002103
[OHML] human gut metagenome; feces
822
913
+
Ser
GGA
[ENA]
¢þ
>WENV182164129
OHML01002055
[OHML] human gut metagenome; feces
824
908
+
Tyr
GTA
[ENA]
¢þ
>WENV182164127
OHML01001672
[OHML] human gut metagenome; feces
849
922
+
Gly
GCC
[ENA]
¢þ
>WENV182164118
OHML01000857
[OHML] human gut metagenome; feces
917
842
-
Asn
GTT
[ENA]
¢þ
>WENV182164128
OHML01001672
[OHML] human gut metagenome; feces
969
1052
+
Leu
CAG
[ENA]
¢þ
>WENV182164120
OHML01000933
[OHML] human gut metagenome; feces
1043
1119
+
Pro
GGG
[ENA]
¢þ
>WENV182164122
OHML01001158
[OHML] human gut metagenome; feces
1167
1243
+
Pro
CGG
[ENA]
¢þ
>WENV182164115
OHML01000715
[OHML] human gut metagenome; feces
1222
1308
+
Leu
CAG
[ENA]
¢þ
>WENV182164116
OHML01000715
[OHML] human gut metagenome; feces
1351
1427
+
Pro
TGG
[ENA]
¢þ
>WENV182164117
OHML01000814
[OHML] human gut metagenome; feces
1461
1377
-
Leu
CAA
[ENA]
¢þ
>WENV182164105
OHML01000008
[OHML] human gut metagenome; feces
1757
1833
+
Ile
GAT
[ENA]
¢þ
>WENV182164106
OHML01000008
[OHML] human gut metagenome; feces
1876
1951
+
Ala
TGC
[ENA]
¢þ
>WENV182164110
OHML01000023
[OHML] human gut metagenome; feces
2163
2089
-
Ala
TGC
[ENA]
¢þ
>WENV182164113
OHML01000273
[OHML] human gut metagenome; feces
2175
2101
-
Gln
CTG
[ENA]
¢þ
>WENV182164109
OHML01000023
[OHML] human gut metagenome; feces
2254
2180
-
Ile
GAT
[ENA]
¢þ
>WENV182164112
OHML01000273
[OHML] human gut metagenome; feces
2299
2223
-
Met
CAT
[ENA]
¢þ
>WENV182164111
OHML01000273
[OHML] human gut metagenome; feces
2389
2315
-
Gln
TTG
[ENA]
¢þ
>WENV182164108
OHML01000013
[OHML] human gut metagenome; feces
6055
5980
-
Thr
GGT
[ENA]
¢þ
>WENV182164107
OHML01000013
[OHML] human gut metagenome; feces
6136
6062
-
Gly
TCC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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