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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OHNV] human gut metagenome; feces
HIT:
23 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182183098
OHNV01001869
[OHNV] human gut metagenome; feces
41
115
+
Pro
TGG
[ENA]
¢þ
>WENV182183099
OHNV01001869
[OHNV] human gut metagenome; feces
153
223
+
Gly
TCC
[ENA]
¢þ
>WENV182183089
OHNV01000571
[OHNV] human gut metagenome; feces
215
286
+
Gln
TTG
[ENA]
¢þ
>WENV182183097
OHNV01001300
[OHNV] human gut metagenome; feces
218
293
+
Val
TAC
[ENA]
¢þ
>WENV182183096
OHNV01001152
[OHNV] human gut metagenome; feces
234
306
+
Glu
TTC
[ENA]
¢þ
>WENV182183088
OHNV01000495
[OHNV] human gut metagenome; feces
247
165
-
Leu
TAG
[ENA]
¢þ
>WENV182183100
OHNV01001869
[OHNV] human gut metagenome; feces
247
321
+
Arg
TCT
[ENA]
¢þ
>WENV182183084
OHNV01000145
[OHNV] human gut metagenome; feces
320
233
-
Leu
TAA
[ENA]
¢þ
>WENV182183093
OHNV01000755
[OHNV] human gut metagenome; feces
527
599
+
Arg
CCT
[ENA]
¢þ
>WENV182183095
OHNV01000941
[OHNV] human gut metagenome; feces
533
460
-
Gly
GCC
[ENA]
¢þ
>WENV182183092
OHNV01000605
[OHNV] human gut metagenome; feces
536
450
-
Leu
TAA
[ENA]
¢þ
>WENV182183085
OHNV01000167
[OHNV] human gut metagenome; feces
538
612
+
Thr
TGT
[ENA]
¢þ
>WENV182183094
OHNV01000941
[OHNV] human gut metagenome; feces
622
540
-
Leu
CAG
[ENA]
¢þ
>WENV182183091
OHNV01000605
[OHNV] human gut metagenome; feces
623
540
-
Tyr
GTA
[ENA]
¢þ
>WENV182183086
OHNV01000167
[OHNV] human gut metagenome; feces
686
769
+
Tyr
GTA
[ENA]
¢þ
>WENV182183090
OHNV01000605
[OHNV] human gut metagenome; feces
712
639
-
Thr
TGT
[ENA]
¢þ
>WENV182183087
OHNV01000262
[OHNV] human gut metagenome; feces
914
829
-
Ser
TGA
[ENA]
¢þ
>WENV182183083
OHNV01000145
[OHNV] human gut metagenome; feces
1132
1059
-
Thr
TGT
[ENA]
¢þ
>WENV182183082
OHNV01000145
[OHNV] human gut metagenome; feces
1323
1252
-
Gln
TTG
[ENA]
¢þ
>WENV182183081
OHNV01000055
[OHNV] human gut metagenome; feces
1849
1922
+
Gly
GCC
[ENA]
¢þ
>WENV182183080
OHNV01000045
[OHNV] human gut metagenome; feces
2125
2199
+
Ile
GAT
[ENA]
¢þ
>WENV182183078
OHNV01000012
[OHNV] human gut metagenome; feces
2819
2895
+
Ile
GAT
[ENA]
¢þ
>WENV182183079
OHNV01000012
[OHNV] human gut metagenome; feces
2924
2998
+
Ala
TGC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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