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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHOB] human gut metagenome; feces
HIT:
10 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182185048
OHOB01000142
[OHOB] human gut metagenome; feces
18
90
+
Thr
GGT
[ENA]
¢þ
>WENV182185046
OHOB01000075
[OHOB] human gut metagenome; feces
42
127
+
Ser
TGA
[ENA]
¢þ
>WENV182185045
OHOB01000021
[OHOB] human gut metagenome; feces
74
148
+
Asp
GTC
[ENA]
¢þ
>WENV182185049
OHOB01000151
[OHOB] human gut metagenome; feces
236
310
+
Ile
GAT
[ENA]
¢þ
>WENV182185050
OHOB01000151
[OHOB] human gut metagenome; feces
321
397
+
Ala
TGC
[ENA]
¢þ
>WENV182185052
OHOB01000962
[OHOB] human gut metagenome; feces
419
490
+
Gln
TTG
[ENA]
¢þ
>WENV182185051
OHOB01000206
[OHOB] human gut metagenome; feces
500
427
-
Gly
GCC
[ENA]
¢þ
>WENV182185047
OHOB01000087
[OHOB] human gut metagenome; feces
724
649
-
Phe
GAA
[ENA]
¢þ
>WENV182185044
OHOB01000003
[OHOB] human gut metagenome; feces
1945
1871
-
Ala
TGC
[ENA]
¢þ
>WENV182185043
OHOB01000003
[OHOB] human gut metagenome; feces
2034
1960
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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