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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OHOD] human gut metagenome; feces
HIT:
20 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182185546
OHOD01002421
[OHOD] human gut metagenome; feces
73
158
+
Leu
AAG
[ENA]
¢þ
>WENV182185539
OHOD01000364
[OHOD] human gut metagenome; feces
99
172
+
fMet
CAT
[ENA]
¢þ
>WENV182185544
OHOD01001839
[OHOD] human gut metagenome; feces
112
38
-
His
GTG
[ENA]
¢þ
>WENV182185529
OHOD01000025
[OHOD] human gut metagenome; feces
264
337
+
Lys
TTT
[ENA]
¢þ
>WENV182185543
OHOD01001839
[OHOD] human gut metagenome; feces
268
198
-
Gly
TCC
[ENA]
¢þ
>WENV182185542
OHOD01001839
[OHOD] human gut metagenome; feces
351
274
-
Pro
TGG
[ENA]
¢þ
>WENV182185545
OHOD01001995
[OHOD] human gut metagenome; feces
352
279
-
Ile
GAT
[ENA]
¢þ
>WENV182185533
OHOD01000084
[OHOD] human gut metagenome; feces
378
450
+
Glu
TTC
[ENA]
¢þ
>WENV182185540
OHOD01000389
[OHOD] human gut metagenome; feces
381
309
-
Arg
CCT
[ENA]
¢þ
>WENV182185541
OHOD01001111
[OHOD] human gut metagenome; feces
476
394
-
Leu
TAG
[ENA]
¢þ
>WENV182185538
OHOD01000151
[OHOD] human gut metagenome; feces
596
525
-
Gln
TTG
[ENA]
¢þ
>WENV182185535
OHOD01000129
[OHOD] human gut metagenome; feces
1087
1162
+
Asp
GTC
[ENA]
¢þ
>WENV182185536
OHOD01000129
[OHOD] human gut metagenome; feces
1168
1241
+
Val
TAC
[ENA]
¢þ
>WENV182185537
OHOD01000129
[OHOD] human gut metagenome; feces
1248
1331
+
Tyr
GTA
[ENA]
¢þ
>WENV182185534
OHOD01000101
[OHOD] human gut metagenome; feces
1293
1367
+
Ile2
CAT
[ENA]
¢þ
>WENV182185527
OHOD01000007
[OHOD] human gut metagenome; feces
1664
1741
+
Ile
GAT
[ENA]
¢þ
>WENV182185528
OHOD01000007
[OHOD] human gut metagenome; feces
1873
1947
+
Ala
TGC
[ENA]
¢þ
>WENV182185532
OHOD01000033
[OHOD] human gut metagenome; feces
1936
1861
-
Phe
GAA
[ENA]
¢þ
>WENV182185531
OHOD01000025
[OHOD] human gut metagenome; feces
2340
2257
-
Tyr
GTA
[ENA]
¢þ
>WENV182185530
OHOD01000025
[OHOD] human gut metagenome; feces
2457
2383
-
Thr
TGT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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