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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHOG] human gut metagenome; feces
HIT:
85 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182185696
OHOG01002548
[OHOG] human gut metagenome; feces
10
97
+
Ser
GGA
[ENA]
¢þ
>WENV182185694
OHOG01002194
[OHOG] human gut metagenome; feces
29
106
+
Gln
TTG
[ENA]
¢þ
>WENV182185644
OHOG01000326
[OHOG] human gut metagenome; feces
61
134
+
Asn
GTT
[ENA]
¢þ
>WENV182185693
OHOG01002101
[OHOG] human gut metagenome; feces
85
160
+
Glu
CTC
[ENA]
¢þ
>WENV182185627
OHOG01000121
[OHOG] human gut metagenome; feces
117
32
-
Leu
AAG
[ENA]
¢þ
>WENV182185692
OHOG01001965
[OHOG] human gut metagenome; feces
119
43
-
Arg
TCT
[ENA]
¢þ
>WENV182185695
OHOG01002337
[OHOG] human gut metagenome; feces
211
137
-
Arg
CCG
[ENA]
¢þ
>WENV182185691
OHOG01001965
[OHOG] human gut metagenome; feces
226
150
-
Pro
TGG
[ENA]
¢þ
>WENV182185682
OHOG01001458
[OHOG] human gut metagenome; feces
261
346
+
Tyr
GTA
[ENA]
¢þ
>WENV182185639
OHOG01000270
[OHOG] human gut metagenome; feces
263
187
-
Pro
CGG
[ENA]
¢þ
>WENV182185684
OHOG01001614
[OHOG] human gut metagenome; feces
296
369
+
Cys
GCA
[ENA]
¢þ
>WENV182185689
OHOG01001669
[OHOG] human gut metagenome; feces
380
305
-
Thr
GGT
[ENA]
¢þ
>WENV182185685
OHOG01001614
[OHOG] human gut metagenome; feces
382
468
+
Leu
TAA
[ENA]
¢þ
>WENV182185634
OHOG01000174
[OHOG] human gut metagenome; feces
416
340
-
Met
CAT
[ENA]
¢þ
>WENV182185683
OHOG01001458
[OHOG] human gut metagenome; feces
451
525
+
Thr
GGT
[ENA]
¢þ
>WENV182185688
OHOG01001669
[OHOG] human gut metagenome; feces
461
387
-
Gly
TCC
[ENA]
¢þ
>WENV182185674
OHOG01001004
[OHOG] human gut metagenome; feces
525
449
-
Val
GAC
[ENA]
¢þ
>WENV182185690
OHOG01001844
[OHOG] human gut metagenome; feces
530
605
+
Asn
GTT
[ENA]
¢þ
>WENV182185670
OHOG01000658
[OHOG] human gut metagenome; feces
538
612
+
Ala
TGC
[ENA]
¢þ
>WENV182185638
OHOG01000260
[OHOG] human gut metagenome; feces
548
472
-
fMet
CAT
[ENA]
¢þ
>WENV182185687
OHOG01001669
[OHOG] human gut metagenome; feces
662
578
-
Tyr
GTA
[ENA]
¢þ
>WENV182185681
OHOG01001456
[OHOG] human gut metagenome; feces
743
670
-
Gly
TCC
[ENA]
¢þ
>WENV182185686
OHOG01001669
[OHOG] human gut metagenome; feces
746
671
-
Thr
TGT
[ENA]
¢þ
>WENV182185675
OHOG01001020
[OHOG] human gut metagenome; feces
782
858
+
Pro
GGG
[ENA]
¢þ
>WENV182185647
OHOG01000408
[OHOG] human gut metagenome; feces
872
947
+
Ala
GGC
[ENA]
¢þ
>WENV182185672
OHOG01000720
[OHOG] human gut metagenome; feces
894
819
-
Thr
CGT
[ENA]
¢þ
>WENV182185679
OHOG01001251
[OHOG] human gut metagenome; feces
1023
1098
+
Lys
TTT
[ENA]
¢þ
>WENV182185680
OHOG01001251
[OHOG] human gut metagenome; feces
1124
1199
+
Lys
CTT
[ENA]
¢þ
>WENV182185668
OHOG01000571
[OHOG] human gut metagenome; feces
1147
1218
+
Arg
CCG
[ENA]
¢þ
>WENV182185635
OHOG01000230
[OHOG] human gut metagenome; feces
1185
1257
+
Thr
CGT
[ENA]
¢þ
>WENV182185645
OHOG01000347
[OHOG] human gut metagenome; feces
1186
1111
-
Lys
TTT
[ENA]
¢þ
>WENV182185666
OHOG01000425
[OHOG] human gut metagenome; feces
1215
1126
-
Ser
GCT
[ENA]
¢þ
>WENV182185676
OHOG01001029
[OHOG] human gut metagenome; feces
1262
1338
+
Asp
GTC
[ENA]
¢þ
>WENV182185665
OHOG01000425
[OHOG] human gut metagenome; feces
1299
1224
-
Ile
GAT
[ENA]
¢þ
>WENV182185632
OHOG01000156
[OHOG] human gut metagenome; feces
1343
1267
-
Pro
TGG
[ENA]
¢þ
>WENV182185677
OHOG01001029
[OHOG] human gut metagenome; feces
1347
1422
+
Trp
CCA
[ENA]
¢þ
>WENV182185678
OHOG01001250
[OHOG] human gut metagenome; feces
1368
1294
-
Gln
CTG
[ENA]
¢þ
>WENV182185664
OHOG01000425
[OHOG] human gut metagenome; feces
1399
1329
-
Gly
TCC
[ENA]
¢þ
>WENV182185673
OHOG01000794
[OHOG] human gut metagenome; feces
1445
1358
-
Ser
TGA
[ENA]
¢þ
>WENV182185631
OHOG01000156
[OHOG] human gut metagenome; feces
1472
1386
-
Leu
CAG
[ENA]
¢þ
>WENV182185663
OHOG01000425
[OHOG] human gut metagenome; feces
1491
1419
-
Phe
GAA
[ENA]
¢þ
>WENV182185669
OHOG01000640
[OHOG] human gut metagenome; feces
1502
1426
-
Arg
TCT
[ENA]
¢þ
>WENV182185630
OHOG01000156
[OHOG] human gut metagenome; feces
1568
1493
-
His
GTG
[ENA]
¢þ
>WENV182185662
OHOG01000425
[OHOG] human gut metagenome; feces
1570
1497
-
fMet
CAT
[ENA]
¢þ
>WENV182185661
OHOG01000425
[OHOG] human gut metagenome; feces
1673
1584
-
Ser
TGA
[ENA]
¢þ
>WENV182185629
OHOG01000156
[OHOG] human gut metagenome; feces
1703
1627
-
Arg
CCG
[ENA]
¢þ
>WENV182185660
OHOG01000425
[OHOG] human gut metagenome; feces
1771
1696
-
Ile2
CAT
[ENA]
¢þ
>WENV182185671
OHOG01000700
[OHOG] human gut metagenome; feces
1806
1731
-
Asn
GTT
[ENA]
¢þ
>WENV182185659
OHOG01000425
[OHOG] human gut metagenome; feces
1866
1791
-
Met
CAT
[ENA]
¢þ
>WENV182185658
OHOG01000425
[OHOG] human gut metagenome; feces
1945
1870
-
Pro
TGG
[ENA]
¢þ
>WENV182185657
OHOG01000425
[OHOG] human gut metagenome; feces
2024
1949
-
Arg
ACG
[ENA]
¢þ
>WENV182185656
OHOG01000425
[OHOG] human gut metagenome; feces
2126
2041
-
Leu
TAA
[ENA]
¢þ
>WENV182185655
OHOG01000425
[OHOG] human gut metagenome; feces
2205
2134
-
Gly
GCC
[ENA]
¢þ
>WENV182185667
OHOG01000556
[OHOG] human gut metagenome; feces
2230
2155
-
Glu
TTC
[ENA]
¢þ
>WENV182185654
OHOG01000425
[OHOG] human gut metagenome; feces
2293
2221
-
Thr
TGT
[ENA]
¢þ
>WENV182185653
OHOG01000425
[OHOG] human gut metagenome; feces
2391
2308
-
Leu
TAG
[ENA]
¢þ
>WENV182185652
OHOG01000425
[OHOG] human gut metagenome; feces
2472
2400
-
Lys
TTT
[ENA]
¢þ
>WENV182185651
OHOG01000425
[OHOG] human gut metagenome; feces
2548
2476
-
Asp
GTC
[ENA]
¢þ
>WENV182185636
OHOG01000256
[OHOG] human gut metagenome; feces
2557
2632
+
Phe
GAA
[ENA]
¢þ
>WENV182185650
OHOG01000425
[OHOG] human gut metagenome; feces
2643
2571
-
Val
TAC
[ENA]
¢þ
>WENV182185628
OHOG01000151
[OHOG] human gut metagenome; feces
2711
2636
-
Ile2
CAT
[ENA]
¢þ
>WENV182185649
OHOG01000423
[OHOG] human gut metagenome; feces
2722
2798
+
Arg
TCT
[ENA]
¢þ
>WENV182185640
OHOG01000290
[OHOG] human gut metagenome; feces
2825
2900
+
Phe
GAA
[ENA]
¢þ
>WENV182185646
OHOG01000386
[OHOG] human gut metagenome; feces
2889
2962
+
Gly
CCC
[ENA]
¢þ
>WENV182185633
OHOG01000171
[OHOG] human gut metagenome; feces
3327
3411
+
Leu
CAA
[ENA]
¢þ
>WENV182185648
OHOG01000419
[OHOG] human gut metagenome; feces
3813
3739
-
Arg
CCT
[ENA]
¢þ
>WENV182185641
OHOG01000294
[OHOG] human gut metagenome; feces
4110
4185
+
Ile2
CAT
[ENA]
¢þ
>WENV182185642
OHOG01000294
[OHOG] human gut metagenome; feces
4193
4269
+
Arg
TCG
[ENA]
¢þ
>WENV182185643
OHOG01000294
[OHOG] human gut metagenome; feces
4283
4359
+
Arg
TCT
[ENA]
¢þ
>WENV182185637
OHOG01000260
[OHOG] human gut metagenome; feces
4417
4331
-
Leu
GAG
[ENA]
¢þ
>WENV182185622
OHOG01000017
[OHOG] human gut metagenome; feces
4469
4542
+
Lys
CTT
[ENA]
¢þ
>WENV182185626
OHOG01000113
[OHOG] human gut metagenome; feces
5753
5828
+
Gly
GCC
[ENA]
¢þ
>WENV182185625
OHOG01000110
[OHOG] human gut metagenome; feces
6209
6280
+
Arg
CCT
[ENA]
¢þ
>WENV182185621
OHOG01000011
[OHOG] human gut metagenome; feces
8186
8116
-
Thr
GGT
[ENA]
¢þ
>WENV182185618
OHOG01000010
[OHOG] human gut metagenome; feces
8325
8237
-
Ser
CGA
[ENA]
¢þ
>WENV182185624
OHOG01000053
[OHOG] human gut metagenome; feces
10293
10387
+
SeC
TCA
[ENA]
¢þ
>WENV182185613
OHOG01000005
[OHOG] human gut metagenome; feces
10911
10991
+
Tyr
GTA
[ENA]
¢þ
>WENV182185614
OHOG01000005
[OHOG] human gut metagenome; feces
10995
11067
+
Trp
CCA
[ENA]
¢þ
>WENV182185615
OHOG01000005
[OHOG] human gut metagenome; feces
11077
11151
+
His
GTG
[ENA]
¢þ
>WENV182185616
OHOG01000005
[OHOG] human gut metagenome; feces
11160
11233
+
Gln
TTG
[ENA]
¢þ
>WENV182185617
OHOG01000005
[OHOG] human gut metagenome; feces
11239
11324
+
Leu
CAA
[ENA]
¢þ
>WENV182185620
OHOG01000011
[OHOG] human gut metagenome; feces
13596
13523
-
Glu
TTC
[ENA]
¢þ
>WENV182185619
OHOG01000011
[OHOG] human gut metagenome; feces
14392
14467
+
Arg
TCT
[ENA]
¢þ
>WENV182185623
OHOG01000045
[OHOG] human gut metagenome; feces
16360
16276
-
Ser
GGA
[ENA]
¢þ
>WENV182185612
OHOG01000001
[OHOG] human gut metagenome; feces
24975
25045
+
Cys
GCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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