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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHOH] human gut metagenome; feces
HIT:
48 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182185724
OHOH01002757
[OHOH] human gut metagenome; feces
47
123
+
Arg
TCT
[ENA]
¢þ
>WENV182185741
OHOH01005683
[OHOH] human gut metagenome; feces
53
128
+
Arg
TCT
[ENA]
¢þ
>WENV182185720
OHOH01002545
[OHOH] human gut metagenome; feces
77
152
+
Thr
TGT
[ENA]
¢þ
>WENV182185737
OHOH01005608
[OHOH] human gut metagenome; feces
78
7
-
Cys
GCA
[ENA]
¢þ
>WENV182185738
OHOH01005629
[OHOH] human gut metagenome; feces
83
167
+
Tyr
GTA
[ENA]
¢þ
>WENV182185716
OHOH01002193
[OHOH] human gut metagenome; feces
88
164
+
Val
TAC
[ENA]
¢þ
>WENV182185729
OHOH01003367
[OHOH] human gut metagenome; feces
121
35
-
Leu
CAG
[ENA]
¢þ
>WENV182185712
OHOH01001427
[OHOH] human gut metagenome; feces
150
74
-
Arg
CCG
[ENA]
¢þ
>WENV182185710
OHOH01000847
[OHOH] human gut metagenome; feces
158
85
-
Pro
CGG
[ENA]
¢þ
>WENV182185721
OHOH01002545
[OHOH] human gut metagenome; feces
158
234
+
Arg
TCT
[ENA]
¢þ
>WENV182185742
OHOH01005683
[OHOH] human gut metagenome; feces
174
249
+
His
GTG
[ENA]
¢þ
>WENV182185734
OHOH01004876
[OHOH] human gut metagenome; feces
210
136
-
Gln
CTG
[ENA]
¢þ
>WENV182185743
OHOH01005683
[OHOH] human gut metagenome; feces
252
326
+
Gln
TTG
[ENA]
¢þ
>WENV182185735
OHOH01004954
[OHOH] human gut metagenome; feces
260
181
-
Leu
CAA
[ENA]
¢þ
>WENV182185739
OHOH01005629
[OHOH] human gut metagenome; feces
284
358
+
Gly
TCC
[ENA]
¢þ
>WENV182185733
OHOH01004876
[OHOH] human gut metagenome; feces
334
258
-
Met
CAT
[ENA]
¢þ
>WENV182185744
OHOH01005683
[OHOH] human gut metagenome; feces
334
408
+
Lys
TTT
[ENA]
¢þ
>WENV182185709
OHOH01000847
[OHOH] human gut metagenome; feces
339
414
+
Phe
GAA
[ENA]
¢þ
>WENV182185707
OHOH01000706
[OHOH] human gut metagenome; feces
358
450
+
Ser
GCT
[ENA]
¢þ
>WENV182185740
OHOH01005629
[OHOH] human gut metagenome; feces
365
440
+
Thr
GGT
[ENA]
¢þ
>WENV182185726
OHOH01002872
[OHOH] human gut metagenome; feces
380
453
+
Trp
CCA
[ENA]
¢þ
>WENV182185711
OHOH01001010
[OHOH] human gut metagenome; feces
416
488
+
Arg
CCT
[ENA]
¢þ
>WENV182185732
OHOH01004876
[OHOH] human gut metagenome; feces
424
350
-
Gln
TTG
[ENA]
¢þ
>WENV182185736
OHOH01005223
[OHOH] human gut metagenome; feces
425
501
+
Val
GAC
[ENA]
¢þ
>WENV182185718
OHOH01002302
[OHOH] human gut metagenome; feces
429
356
-
Pro
CGG
[ENA]
¢þ
>WENV182185708
OHOH01000706
[OHOH] human gut metagenome; feces
454
530
+
Arg
ACG
[ENA]
¢þ
>WENV182185727
OHOH01002929
[OHOH] human gut metagenome; feces
463
374
-
Ser
CGA
[ENA]
¢þ
>WENV182185731
OHOH01004876
[OHOH] human gut metagenome; feces
532
448
-
Leu
TAG
[ENA]
¢þ
>WENV182185717
OHOH01002302
[OHOH] human gut metagenome; feces
532
459
-
Gln
CTG
[ENA]
¢þ
>WENV182185715
OHOH01001773
[OHOH] human gut metagenome; feces
575
500
-
Asn
GTT
[ENA]
¢þ
>WENV182185719
OHOH01002445
[OHOH] human gut metagenome; feces
610
697
+
Ser
GGA
[ENA]
¢þ
>WENV182185730
OHOH01003600
[OHOH] human gut metagenome; feces
670
595
-
Trp
CCA
[ENA]
¢þ
>WENV182185699
OHOH01000055
[OHOH] human gut metagenome; feces
691
616
-
Gly
GCC
[ENA]
¢þ
>WENV182185725
OHOH01002846
[OHOH] human gut metagenome; feces
707
789
+
Leu
TAG
[ENA]
¢þ
>WENV182185722
OHOH01002580
[OHOH] human gut metagenome; feces
719
794
+
Ile2
CAT
[ENA]
¢þ
>WENV182185723
OHOH01002583
[OHOH] human gut metagenome; feces
735
806
+
Asn
GTT
[ENA]
¢þ
>WENV182185728
OHOH01003044
[OHOH] human gut metagenome; feces
746
659
-
Ser
TGA
[ENA]
¢þ
>WENV182185714
OHOH01001564
[OHOH] human gut metagenome; feces
913
839
-
Ala
TGC
[ENA]
¢þ
>WENV182185713
OHOH01001564
[OHOH] human gut metagenome; feces
1013
937
-
Ile
GAT
[ENA]
¢þ
>WENV182185703
OHOH01000229
[OHOH] human gut metagenome; feces
1108
1024
-
Leu
CAA
[ENA]
¢þ
>WENV182185705
OHOH01000533
[OHOH] human gut metagenome; feces
1219
1144
-
Ile2
CAT
[ENA]
¢þ
>WENV182185704
OHOH01000301
[OHOH] human gut metagenome; feces
1242
1167
-
Thr
CGT
[ENA]
¢þ
>WENV182185706
OHOH01000628
[OHOH] human gut metagenome; feces
1350
1274
-
fMet
CAT
[ENA]
¢þ
>WENV182185702
OHOH01000186
[OHOH] human gut metagenome; feces
1895
1970
+
Phe
GAA
[ENA]
¢þ
>WENV182185701
OHOH01000066
[OHOH] human gut metagenome; feces
2171
2097
-
Ala
TGC
[ENA]
¢þ
>WENV182185700
OHOH01000066
[OHOH] human gut metagenome; feces
2262
2188
-
Ile
GAT
[ENA]
¢þ
>WENV182185698
OHOH01000003
[OHOH] human gut metagenome; feces
5296
5221
-
Ala
TGC
[ENA]
¢þ
>WENV182185697
OHOH01000003
[OHOH] human gut metagenome; feces
5415
5339
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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