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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA gene List
[OHPU] human gut metagenome; feces
HIT:
26 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182206131
OHPU01001086
[OHPU] human gut metagenome; feces
73
148
+
Ala
TGC
[ENA]
¢þ
>WENV182206133
OHPU01001417
[OHPU] human gut metagenome; feces
84
159
+
Ala
TGC
[ENA]
¢þ
>WENV182206126
OHPU01000551
[OHPU] human gut metagenome; feces
128
52
-
His
GTG
[ENA]
¢þ
>WENV182206125
OHPU01000551
[OHPU] human gut metagenome; feces
210
137
-
Arg
TCT
[ENA]
¢þ
>WENV182206114
OHPU01000031
[OHPU] human gut metagenome; feces
234
309
+
Phe
GAA
[ENA]
¢þ
>WENV182206130
OHPU01001013
[OHPU] human gut metagenome; feces
256
329
+
Trp
CCA
[ENA]
¢þ
>WENV182206124
OHPU01000551
[OHPU] human gut metagenome; feces
287
214
-
Gly
TCC
[ENA]
¢þ
>WENV182206129
OHPU01001004
[OHPU] human gut metagenome; feces
302
226
-
Arg
ACG
[ENA]
¢þ
>WENV182206128
OHPU01000701
[OHPU] human gut metagenome; feces
313
240
-
Lys
TTT
[ENA]
¢þ
>WENV182206119
OHPU01000127
[OHPU] human gut metagenome; feces
320
391
+
Gln
CTG
[ENA]
¢þ
>WENV182206123
OHPU01000525
[OHPU] human gut metagenome; feces
376
304
-
Thr
GGT
[ENA]
¢þ
>WENV182206127
OHPU01000573
[OHPU] human gut metagenome; feces
388
314
-
Thr
TGT
[ENA]
¢þ
>WENV182206132
OHPU01001266
[OHPU] human gut metagenome; feces
422
496
+
Asn
GTT
[ENA]
¢þ
>WENV182206115
OHPU01000035
[OHPU] human gut metagenome; feces
431
356
-
Pro
TGG
[ENA]
¢þ
>WENV182206122
OHPU01000525
[OHPU] human gut metagenome; feces
550
467
-
Tyr
GTA
[ENA]
¢þ
>WENV182206121
OHPU01000284
[OHPU] human gut metagenome; feces
554
470
-
Tyr
GTA
[ENA]
¢þ
>WENV182206120
OHPU01000157
[OHPU] human gut metagenome; feces
698
784
+
Leu
CAG
[ENA]
¢þ
>WENV182206116
OHPU01000065
[OHPU] human gut metagenome; feces
781
866
+
Ser
TGA
[ENA]
¢þ
>WENV182206118
OHPU01000088
[OHPU] human gut metagenome; feces
908
983
+
Val
GAC
[ENA]
¢þ
>WENV182206117
OHPU01000085
[OHPU] human gut metagenome; feces
990
917
-
fMet
CAT
[ENA]
¢þ
>WENV182206113
OHPU01000028
[OHPU] human gut metagenome; feces
1720
1636
-
Leu
TAA
[ENA]
¢þ
>WENV182206112
OHPU01000028
[OHPU] human gut metagenome; feces
1807
1734
-
Gly
GCC
[ENA]
¢þ
>WENV182206111
OHPU01000028
[OHPU] human gut metagenome; feces
1913
1829
-
Leu
GAG
[ENA]
¢þ
>WENV182206110
OHPU01000028
[OHPU] human gut metagenome; feces
2032
1950
-
Leu
CAG
[ENA]
¢þ
>WENV182206109
OHPU01000009
[OHPU] human gut metagenome; feces
2196
2122
-
Ala
TGC
[ENA]
¢þ
>WENV182206108
OHPU01000009
[OHPU] human gut metagenome; feces
2301
2225
-
Ile
GAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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