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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OHQV] human gut metagenome; feces
HIT:
50 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182222056
OHQV01000895
[OHQV] human gut metagenome; feces
46
119
+
Pro
CGG
[ENA]
¢þ
>WENV182222068
OHQV01001359
[OHQV] human gut metagenome; feces
92
167
+
Arg
TCT
[ENA]
¢þ
>WENV182222071
OHQV01001815
[OHQV] human gut metagenome; feces
106
32
-
Sup
CTA
[ENA]
¢þ
>WENV182222057
OHQV01000920
[OHQV] human gut metagenome; feces
135
211
+
fMet
CAT
[ENA]
¢þ
>WENV182222049
OHQV01000534
[OHQV] human gut metagenome; feces
165
93
-
Arg
CCT
[ENA]
¢þ
>WENV182222069
OHQV01001359
[OHQV] human gut metagenome; feces
175
251
+
His
GTG
[ENA]
¢þ
>WENV182222070
OHQV01001544
[OHQV] human gut metagenome; feces
210
135
-
Val
GAC
[ENA]
¢þ
>WENV182222058
OHQV01000920
[OHQV] human gut metagenome; feces
229
304
+
Gly
TCC
[ENA]
¢þ
>WENV182222055
OHQV01000765
[OHQV] human gut metagenome; feces
242
167
-
Pro
GGG
[ENA]
¢þ
>WENV182222074
OHQV01002259
[OHQV] human gut metagenome; feces
243
318
+
Ala
GGC
[ENA]
¢þ
>WENV182222053
OHQV01000710
[OHQV] human gut metagenome; feces
258
330
+
Cys
GCA
[ENA]
¢þ
>WENV182222075
OHQV01002425
[OHQV] human gut metagenome; feces
278
365
+
Ser
TGA
[ENA]
¢þ
>WENV182222073
OHQV01001824
[OHQV] human gut metagenome; feces
292
218
-
Glu
TTC
[ENA]
¢þ
>WENV182222066
OHQV01000989
[OHQV] human gut metagenome; feces
305
378
+
Thr
CGT
[ENA]
¢þ
>WENV182222059
OHQV01000920
[OHQV] human gut metagenome; feces
310
385
+
Lys
TTT
[ENA]
¢þ
>WENV182222060
OHQV01000920
[OHQV] human gut metagenome; feces
391
467
+
Arg
TCT
[ENA]
¢þ
>WENV182222076
OHQV01002425
[OHQV] human gut metagenome; feces
397
488
+
Ser
GCT
[ENA]
¢þ
>WENV182222067
OHQV01001319
[OHQV] human gut metagenome; feces
421
494
+
Gln
CTG
[ENA]
¢þ
>WENV182222072
OHQV01001824
[OHQV] human gut metagenome; feces
461
385
-
Met
CAT
[ENA]
¢þ
>WENV182222061
OHQV01000920
[OHQV] human gut metagenome; feces
485
561
+
Ile2
CAT
[ENA]
¢þ
>WENV182222062
OHQV01000920
[OHQV] human gut metagenome; feces
564
638
+
Glu
TTC
[ENA]
¢þ
>WENV182222065
OHQV01000950
[OHQV] human gut metagenome; feces
650
736
+
Leu
CAG
[ENA]
¢þ
>WENV182222063
OHQV01000920
[OHQV] human gut metagenome; feces
665
748
+
Ser
TGA
[ENA]
¢þ
>WENV182222064
OHQV01000920
[OHQV] human gut metagenome; feces
866
941
+
Gly
GCC
[ENA]
¢þ
>WENV182222054
OHQV01000724
[OHQV] human gut metagenome; feces
1087
1162
+
Asn
GTT
[ENA]
¢þ
>WENV182222035
OHQV01000125
[OHQV] human gut metagenome; feces
1292
1367
+
Val
TAC
[ENA]
¢þ
>WENV182222052
OHQV01000669
[OHQV] human gut metagenome; feces
1376
1447
+
Gln
CTG
[ENA]
¢þ
>WENV182222051
OHQV01000654
[OHQV] human gut metagenome; feces
1421
1495
+
His
GTG
[ENA]
¢þ
>WENV182222050
OHQV01000553
[OHQV] human gut metagenome; feces
2013
1939
-
Asp
GTC
[ENA]
¢þ
>WENV182222048
OHQV01000509
[OHQV] human gut metagenome; feces
2255
2329
+
Met
CAT
[ENA]
¢þ
>WENV182222043
OHQV01000315
[OHQV] human gut metagenome; feces
2902
2976
+
Ile
GAT
[ENA]
¢þ
>WENV182222028
OHQV01000012
[OHQV] human gut metagenome; feces
2917
2833
-
Leu
CAA
[ENA]
¢þ
>WENV182222047
OHQV01000399
[OHQV] human gut metagenome; feces
2957
3032
+
Pro
TGG
[ENA]
¢þ
>WENV182222044
OHQV01000315
[OHQV] human gut metagenome; feces
3071
3145
+
Ala
TGC
[ENA]
¢þ
>WENV182222040
OHQV01000213
[OHQV] human gut metagenome; feces
3076
3149
+
Gly
CCC
[ENA]
¢þ
>WENV182222045
OHQV01000353
[OHQV] human gut metagenome; feces
3422
3509
+
Ser
GCT
[ENA]
¢þ
>WENV182222046
OHQV01000353
[OHQV] human gut metagenome; feces
3567
3639
+
Glu
CTC
[ENA]
¢þ
>WENV182222042
OHQV01000307
[OHQV] human gut metagenome; feces
4087
4160
+
Phe
GAA
[ENA]
¢þ
>WENV182222039
OHQV01000186
[OHQV] human gut metagenome; feces
4255
4328
+
Lys
TTT
[ENA]
¢þ
>WENV182222038
OHQV01000163
[OHQV] human gut metagenome; feces
4874
4947
+
Gly
GCC
[ENA]
¢þ
>WENV182222041
OHQV01000235
[OHQV] human gut metagenome; feces
5207
5278
+
Gln
TTG
[ENA]
¢þ
>WENV182222037
OHQV01000156
[OHQV] human gut metagenome; feces
6435
6509
+
Ala
GGC
[ENA]
¢þ
>WENV182222030
OHQV01000043
[OHQV] human gut metagenome; feces
6525
6607
+
Leu
TAG
[ENA]
¢þ
>WENV182222036
OHQV01000132
[OHQV] human gut metagenome; feces
7078
6993
-
Leu
TAA
[ENA]
¢þ
>WENV182222032
OHQV01000066
[OHQV] human gut metagenome; feces
9242
9316
+
Thr
TGT
[ENA]
¢þ
>WENV182222033
OHQV01000066
[OHQV] human gut metagenome; feces
9386
9469
+
Tyr
GTA
[ENA]
¢þ
>WENV182222034
OHQV01000066
[OHQV] human gut metagenome; feces
9485
9557
+
Thr
GGT
[ENA]
¢þ
>WENV182222031
OHQV01000064
[OHQV] human gut metagenome; feces
9544
9617
+
fMet
CAT
[ENA]
¢þ
>WENV182222029
OHQV01000030
[OHQV] human gut metagenome; feces
10051
9966
-
Ser
TGA
[ENA]
¢þ
>WENV182222027
OHQV01000002
[OHQV] human gut metagenome; feces
10829
10901
+
Glu
TTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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