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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OHSV] human gut metagenome; feces
HIT:
17 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182251389
OHSV01001880
[OHSV] human gut metagenome; feces
122
46
-
Ile2
CAT
[ENA]
¢þ
>WENV182251387
OHSV01001094
[OHSV] human gut metagenome; feces
169
245
+
Arg
ACG
[ENA]
¢þ
>WENV182251383
OHSV01000450
[OHSV] human gut metagenome; feces
359
435
+
Arg
TCT
[ENA]
¢þ
>WENV182251388
OHSV01001611
[OHSV] human gut metagenome; feces
429
504
+
Ile
GAT
[ENA]
¢þ
>WENV182251384
OHSV01000450
[OHSV] human gut metagenome; feces
442
518
+
His
GTG
[ENA]
¢þ
>WENV182251386
OHSV01000450
[OHSV] human gut metagenome; feces
786
713
-
Pro
CGG
[ENA]
¢þ
>WENV182251385
OHSV01000450
[OHSV] human gut metagenome; feces
889
816
-
Gln
CTG
[ENA]
¢þ
>WENV182251381
OHSV01000289
[OHSV] human gut metagenome; feces
1148
1227
+
His
GTG
[ENA]
¢þ
>WENV182251382
OHSV01000289
[OHSV] human gut metagenome; feces
1271
1345
+
Gln
TTG
[ENA]
¢þ
>WENV182251380
OHSV01000187
[OHSV] human gut metagenome; feces
1421
1337
-
Tyr
GTA
[ENA]
¢þ
>WENV182251379
OHSV01000059
[OHSV] human gut metagenome; feces
1928
1853
-
Lys
CTT
[ENA]
¢þ
>WENV182251378
OHSV01000059
[OHSV] human gut metagenome; feces
2006
1932
-
Glu
CTC
[ENA]
¢þ
>WENV182251377
OHSV01000028
[OHSV] human gut metagenome; feces
2165
2091
-
Cys
GCA
[ENA]
¢þ
>WENV182251376
OHSV01000028
[OHSV] human gut metagenome; feces
2269
2194
-
Gly
GCC
[ENA]
¢þ
>WENV182251375
OHSV01000028
[OHSV] human gut metagenome; feces
2442
2367
-
Phe
GAA
[ENA]
¢þ
>WENV182251374
OHSV01000028
[OHSV] human gut metagenome; feces
2522
2447
-
Asp
GTC
[ENA]
¢þ
>WENV182251373
OHSV01000028
[OHSV] human gut metagenome; feces
2600
2525
-
Val
TAC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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