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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OHTQ] human gut metagenome; feces
HIT:
51 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182263208
OHTQ01000654
[OHTQ] human gut metagenome; feces
3
76
+
Val
CAC
[ENA]
¢þ
>WENV182263222
OHTQ01001166
[OHTQ] human gut metagenome; feces
81
7
-
Pro
TGG
[ENA]
¢þ
>WENV182263201
OHTQ01000199
[OHTQ] human gut metagenome; feces
99
25
-
His
GTG
[ENA]
¢þ
>WENV182263238
OHTQ01001765
[OHTQ] human gut metagenome; feces
100
24
-
Arg
TCT
[ENA]
¢þ
>WENV182263197
OHTQ01000100
[OHTQ] human gut metagenome; feces
138
62
-
Ile
GAT
[ENA]
¢þ
>WENV182263230
OHTQ01001670
[OHTQ] human gut metagenome; feces
142
215
+
fMet
CAT
[ENA]
¢þ
>WENV182263205
OHTQ01000497
[OHTQ] human gut metagenome; feces
152
80
-
Val
GAC
[ENA]
¢þ
>WENV182263231
OHTQ01001676
[OHTQ] human gut metagenome; feces
161
235
+
Ile
GAT
[ENA]
¢þ
>WENV182263216
OHTQ01000891
[OHTQ] human gut metagenome; feces
190
266
+
Arg
TCT
[ENA]
¢þ
>WENV182263225
OHTQ01001525
[OHTQ] human gut metagenome; feces
198
123
-
Lys
CTT
[ENA]
¢þ
>WENV182263237
OHTQ01001765
[OHTQ] human gut metagenome; feces
223
150
-
Gly
TCC
[ENA]
¢þ
>WENV182263209
OHTQ01000705
[OHTQ] human gut metagenome; feces
243
316
+
Arg
CCT
[ENA]
¢þ
>WENV182263227
OHTQ01001664
[OHTQ] human gut metagenome; feces
245
326
+
Leu
CAG
[ENA]
¢þ
>WENV182263232
OHTQ01001676
[OHTQ] human gut metagenome; feces
277
350
+
Ala
TGC
[ENA]
¢þ
>WENV182263223
OHTQ01001421
[OHTQ] human gut metagenome; feces
294
220
-
Pro
CGG
[ENA]
¢þ
>WENV182263236
OHTQ01001765
[OHTQ] human gut metagenome; feces
303
229
-
Phe
GAA
[ENA]
¢þ
>WENV182263218
OHTQ01001104
[OHTQ] human gut metagenome; feces
314
387
+
Glu
CTC
[ENA]
¢þ
>WENV182263211
OHTQ01000736
[OHTQ] human gut metagenome; feces
332
412
+
Leu
TAA
[ENA]
¢þ
>WENV182263228
OHTQ01001664
[OHTQ] human gut metagenome; feces
333
406
+
Gly
GCC
[ENA]
¢þ
>WENV182263233
OHTQ01001676
[OHTQ] human gut metagenome; feces
351
424
+
Ala
GGC
[ENA]
¢þ
>WENV182263207
OHTQ01000627
[OHTQ] human gut metagenome; feces
357
445
+
Ser
GGA
[ENA]
¢þ
>WENV182263226
OHTQ01001594
[OHTQ] human gut metagenome; feces
375
460
+
Ser
TGA
[ENA]
¢þ
>WENV182263240
OHTQ01001888
[OHTQ] human gut metagenome; feces
378
454
+
Pro
GGG
[ENA]
¢þ
>WENV182263235
OHTQ01001765
[OHTQ] human gut metagenome; feces
382
309
-
fMet
CAT
[ENA]
¢þ
>WENV182263229
OHTQ01001664
[OHTQ] human gut metagenome; feces
422
507
+
Leu
TAA
[ENA]
¢þ
>WENV182263219
OHTQ01001104
[OHTQ] human gut metagenome; feces
425
499
+
Gln
CTG
[ENA]
¢þ
>WENV182263210
OHTQ01000726
[OHTQ] human gut metagenome; feces
452
526
+
Leu
CAA
[ENA]
¢þ
>WENV182263239
OHTQ01001870
[OHTQ] human gut metagenome; feces
470
397
-
Gly
CCC
[ENA]
¢þ
>WENV182263234
OHTQ01001765
[OHTQ] human gut metagenome; feces
470
398
-
Thr
TGT
[ENA]
¢þ
>WENV182263194
OHTQ01000053
[OHTQ] human gut metagenome; feces
486
559
+
Gly
TCC
[ENA]
¢þ
>WENV182263200
OHTQ01000167
[OHTQ] human gut metagenome; feces
498
572
+
Thr
TGT
[ENA]
¢þ
>WENV182263221
OHTQ01001119
[OHTQ] human gut metagenome; feces
510
436
-
Met
CAT
[ENA]
¢þ
>WENV182263215
OHTQ01000797
[OHTQ] human gut metagenome; feces
532
450
-
Tyr
GTA
[ENA]
¢þ
>WENV182263198
OHTQ01000120
[OHTQ] human gut metagenome; feces
568
644
+
fMet
CAT
[ENA]
¢þ
>WENV182263224
OHTQ01001479
[OHTQ] human gut metagenome; feces
570
494
-
Ile
GAT
[ENA]
¢þ
>WENV182263206
OHTQ01000579
[OHTQ] human gut metagenome; feces
654
740
+
Ser
CGA
[ENA]
¢þ
>WENV182263220
OHTQ01001119
[OHTQ] human gut metagenome; feces
670
588
-
Tyr
GTA
[ENA]
¢þ
>WENV182263217
OHTQ01001052
[OHTQ] human gut metagenome; feces
675
600
-
Thr
TGT
[ENA]
¢þ
>WENV182263214
OHTQ01000797
[OHTQ] human gut metagenome; feces
768
696
-
Glu
TTC
[ENA]
¢þ
>WENV182263195
OHTQ01000054
[OHTQ] human gut metagenome; feces
771
697
-
Asp
GTC
[ENA]
¢þ
>WENV182263190
OHTQ01000023
[OHTQ] human gut metagenome; feces
801
875
+
Lys
CTT
[ENA]
¢þ
>WENV182263213
OHTQ01000797
[OHTQ] human gut metagenome; feces
844
773
-
Gln
TTG
[ENA]
¢þ
>WENV182263212
OHTQ01000797
[OHTQ] human gut metagenome; feces
922
849
-
Trp
CCA
[ENA]
¢þ
>WENV182263203
OHTQ01000365
[OHTQ] human gut metagenome; feces
973
1048
+
Trp
CCA
[ENA]
¢þ
>WENV182263199
OHTQ01000160
[OHTQ] human gut metagenome; feces
1158
1084
-
Val
TAC
[ENA]
¢þ
>WENV182263204
OHTQ01000491
[OHTQ] human gut metagenome; feces
1168
1094
-
Ala
TGC
[ENA]
¢þ
>WENV182263202
OHTQ01000281
[OHTQ] human gut metagenome; feces
1469
1543
+
Ile
TAT
[ENA]
¢þ
>WENV182263196
OHTQ01000099
[OHTQ] human gut metagenome; feces
2060
1987
-
Lys
TTT
[ENA]
¢þ
>WENV182263193
OHTQ01000052
[OHTQ] human gut metagenome; feces
2521
2610
+
Ser
GCT
[ENA]
¢þ
>WENV182263191
OHTQ01000047
[OHTQ] human gut metagenome; feces
2830
2905
+
Thr
CGT
[ENA]
¢þ
>WENV182263192
OHTQ01000047
[OHTQ] human gut metagenome; feces
2998
3079
+
Leu
TAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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