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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[OHTS] human gut metagenome; feces
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182263291
OHTS01000861
[OHTS] human gut metagenome; feces
25
108
+
Tyr
GTA
[ENA]
¢þ
>WENV182263295
OHTS01001332
[OHTS] human gut metagenome; feces
72
147
+
His
GTG
[ENA]
¢þ
>WENV182263281
OHTS01000490
[OHTS] human gut metagenome; feces
138
211
+
Trp
CCA
[ENA]
¢þ
>WENV182263296
OHTS01001332
[OHTS] human gut metagenome; feces
157
232
+
Lys
TTT
[ENA]
¢þ
>WENV182263292
OHTS01001083
[OHTS] human gut metagenome; feces
159
83
-
Val
TAC
[ENA]
¢þ
>WENV182263301
OHTS01002533
[OHTS] human gut metagenome; feces
169
245
+
Leu
TAA
[ENA]
¢þ
>WENV182263300
OHTS01002433
[OHTS] human gut metagenome; feces
176
103
-
Lys
TTT
[ENA]
¢þ
>WENV182263282
OHTS01000560
[OHTS] human gut metagenome; feces
244
170
-
Ile2
CAT
[ENA]
¢þ
>WENV182263302
OHTS01002533
[OHTS] human gut metagenome; feces
273
347
+
Thr
TGT
[ENA]
¢þ
>WENV182263284
OHTS01000646
[OHTS] human gut metagenome; feces
292
217
-
Phe
GAA
[ENA]
¢þ
>WENV182263299
OHTS01002196
[OHTS] human gut metagenome; feces
305
223
-
Leu
TAG
[ENA]
¢þ
>WENV182263283
OHTS01000635
[OHTS] human gut metagenome; feces
322
393
+
Gln
TTG
[ENA]
¢þ
>WENV182263285
OHTS01000647
[OHTS] human gut metagenome; feces
356
443
+
Ser
GCT
[ENA]
¢þ
>WENV182263290
OHTS01000739
[OHTS] human gut metagenome; feces
376
301
-
Val
TAC
[ENA]
¢þ
>WENV182263297
OHTS01001390
[OHTS] human gut metagenome; feces
411
499
+
Ser
GGA
[ENA]
¢þ
>WENV182263276
OHTS01000106
[OHTS] human gut metagenome; feces
417
491
+
Thr
TGT
[ENA]
¢þ
>WENV182263298
OHTS01001705
[OHTS] human gut metagenome; feces
427
511
+
Leu
CAA
[ENA]
¢þ
>WENV182263289
OHTS01000739
[OHTS] human gut metagenome; feces
471
387
-
Tyr
GTA
[ENA]
¢þ
>WENV182263294
OHTS01001310
[OHTS] human gut metagenome; feces
476
400
-
Ala
TGC
[ENA]
¢þ
>WENV182263286
OHTS01000668
[OHTS] human gut metagenome; feces
492
420
-
Glu
TTC
[ENA]
¢þ
>WENV182263279
OHTS01000283
[OHTS] human gut metagenome; feces
522
449
-
Gly
GCC
[ENA]
¢þ
>WENV182263293
OHTS01001310
[OHTS] human gut metagenome; feces
557
481
-
Ile
GAT
[ENA]
¢þ
>WENV182263277
OHTS01000106
[OHTS] human gut metagenome; feces
561
644
+
Tyr
GTA
[ENA]
¢þ
>WENV182263288
OHTS01000739
[OHTS] human gut metagenome; feces
581
507
-
Glu
TTC
[ENA]
¢þ
>WENV182263278
OHTS01000106
[OHTS] human gut metagenome; feces
661
733
+
Thr
GGT
[ENA]
¢þ
>WENV182263287
OHTS01000739
[OHTS] human gut metagenome; feces
665
589
-
Ile2
CAT
[ENA]
¢þ
>WENV182263280
OHTS01000308
[OHTS] human gut metagenome; feces
670
743
+
Ala
TGC
[ENA]
¢þ
>WENV182263274
OHTS01000016
[OHTS] human gut metagenome; feces
2170
2096
-
Ala
TGC
[ENA]
¢þ
>WENV182263275
OHTS01000031
[OHTS] human gut metagenome; feces
2238
2164
-
Met
CAT
[ENA]
¢þ
>WENV182263273
OHTS01000016
[OHTS] human gut metagenome; feces
2261
2187
-
Ile
GAT
[ENA]
¢þ
>WENV182263272
OHTS01000009
[OHTS] human gut metagenome; feces
5008
5083
+
Asn
GTT
[ENA]
¢þ
>WENV182263271
OHTS01000005
[OHTS] human gut metagenome; feces
7200
7118
-
Tyr
GTA
[ENA]
¢þ
>WENV182263270
OHTS01000005
[OHTS] human gut metagenome; feces
7435
7363
-
Glu
TTC
[ENA]
¢þ
>WENV182263269
OHTS01000005
[OHTS] human gut metagenome; feces
7511
7440
-
Gln
TTG
[ENA]
¢þ
>WENV182263268
OHTS01000005
[OHTS] human gut metagenome; feces
7589
7516
-
Trp
CCA
[ENA]
¢þ
>WENV182263267
OHTS01000005
[OHTS] human gut metagenome; feces
7669
7596
-
Asn
GTT
[ENA]
¢þ
>WENV182263266
OHTS01000005
[OHTS] human gut metagenome; feces
7959
7886
-
fMet
CAT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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